Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04957 and RBAM_030400

See DNA alignment / Visit BSNT_04957 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence pep-align/BSNT_04957___yvrL.1.9828.seq
#    -bsequence pep-align/RBAM_030400___yvrL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04957___yvrL-RBAM_030400___yvrL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04957___yvrL-RBAM_030400___yvrL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04957___yvrL
# 2: RBAM_030400___yvrL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 140
# Identity:      76/140 (54.3%)
# Similarity:    88/140 (62.9%)
# Gaps:          29/140 (20.7%)
# Score: 385.0
# 
#
#=======================================

BSNT_04957___      1 -------------------------MTYFAVIYILFSLAGTSYRSAAHVL     25
                                              ..||.|:..:||||||||.|.|:||
RBAM_030400__      1 MINQNGTKMFILQVLRYALAAAAVLFGYFIVMMAVFSLAGTSYGSMAYVL     50

BSNT_04957___     26 LFAVVFLVLGLCFEPFERLMIHSFTFFKTGKRLFILLAGIVQLLFLWMTA     75
                     ||:|:|:.|||||||.|||||||||||.||:..|:|||..||||||||||
RBAM_030400__     51 LFSVLFIFLGLCFEPLERLMIHSFTFFGTGRLPFLLLASTVQLLFLWMTA    100

BSNT_04957___     76 HTTDQLISDIWLSTTEEMIVAAVFLILDKCNSALPS----    111
                     :|||:||..||||||||:|||.||.:||||.|....    
RBAM_030400__    101 YTTDKLIEKIWLSTTEELIVAGVFFVLDKCVSGEKQPRAQ    140


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