Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04908 and RBAM_030090

See DNA alignment / Visit BSNT_04908 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence pep-align/BSNT_04908.1.9828.seq
#    -bsequence pep-align/RBAM_030090___yusZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04908-RBAM_030090___yusZ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04908-RBAM_030090___yusZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04908
# 2: RBAM_030090___yusZ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     161/280 (57.5%)
# Similarity:   197/280 (70.4%)
# Gaps:          50/280 (17.9%)
# Score: 881.0
# 
#
#=======================================

BSNT_04908         0 --------------------------------------------------      0
                                                                       
RBAM_030090__      1 MNRKIAIVTGATSGFGLLTALKLARSYHVIATARQPEKAEILKEAAAQAG     50

BSNT_04908         1 MSDSIHITALDVTDEQSIVSFGKAISAYAPIDLLVNNAGTAYGGFIEDVP     50
                     .|:.:.:.:||||:|||:..||..||.:.|||||||||||||||||:||.
RBAM_030090__     51 ASEHVTVVSLDVTNEQSVSDFGNTISGFGPIDLLVNNAGTAYGGFIDDVL    100

BSNT_04908        51 MEHFREQFETNVFGVIHVTKTVLPYIRKHGGAKIINVSSISGLTGFPALS    100
                     |||:|:|:|:||||:||||||||||:|||.||||.|:|||||||||||||
RBAM_030090__    101 MEHYRQQYESNVFGLIHVTKTVLPYMRKHSGAKIFNISSISGLTGFPALS    150

BSNT_04908       101 PYVSSKHALEGFSESLRIELLPFGIETALIEPGSYKTSIWSTSLSNFMSV    150
                     ||||||.|:|||:||||:||||.||:.|||||||||||||.|||||.::.
RBAM_030090__    151 PYVSSKFAVEGFTESLRLELLPLGIDAALIEPGSYKTSIWETSLSNHLTA    200

BSNT_04908       151 PADDSAYHQYYKKILSYVQKTGEESGDPQEVADLIYQLATKQHIKKLRYP    200
                     |..||.|::||::|.:|.:....:||||.:||:||||||.::.:||||||
RBAM_030090__    201 PGKDSPYYRYYQQIEAYFKANASKSGDPDDVAELIYQLAQRKRLKKLRYP    250

BSNT_04908       201 IGKGIKLTLLFRSLFPWSAWESILKKKLFK    230
                     ||:|:||||.|||||||||||||:|||||.
RBAM_030090__    251 IGRGVKLTLAFRSLFPWSAWESIIKKKLFT    280


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