Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04887 and RBAM_030060

See DNA alignment / Visit BSNT_04887 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence pep-align/BSNT_04887___yusV.1.9828.seq
#    -bsequence pep-align/RBAM_030060___yusV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04887___yusV-RBAM_030060___yusV.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04887___yusV-RBAM_030060___yusV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04887___yusV
# 2: RBAM_030060___yusV
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 296
# Identity:     247/296 (83.4%)
# Similarity:   262/296 (88.5%)
# Gaps:          23/296 ( 7.8%)
# Score: 1280.0
# 
#
#=======================================

BSNT_04887___      1 MYIENVQYIVLLKSQQKGAVMGMSAISTETLSLGYGDAVIIDELNLTIPK     50
                                           ||||||||||||||:.||||||::.|||
RBAM_030060__      1 ----------------------MSAISTETLSLGYGETVIIDELDVAIPK     28

BSNT_04887___     51 GEITVFIGSNGCGKSTLLRSLARLMKPRGGSVLLEGRAIAKLPTKEVAKE    100
                     |||||.||||||||||||||||||||||||||||||:|||||||||||:|
RBAM_030060__     29 GEITVLIGSNGCGKSTLLRSLARLMKPRGGSVLLEGKAIAKLPTKEVARE     78

BSNT_04887___    101 LAILPQGPSAPEGLTVHQLVKQGRYPYQNWLKQWSKEDEEAVERALKATK    150
                     ||||||.|||||||||||||||||||||:||||||||||:||.:||||||
RBAM_030060__     79 LAILPQSPSAPEGLTVHQLVKQGRYPYQSWLKQWSKEDEDAVAKALKATK    128

BSNT_04887___    151 LEDMADRAVDSLSGGQRQRAWIAMTLAQETDIILLDEPTTYLDMTHQIEI    200
                     ||:||||.||||||||||||||||||||:|||||||||||||||||||||
RBAM_030060__    129 LEEMADRPVDSLSGGQRQRAWIAMTLAQDTDIILLDEPTTYLDMTHQIEI    178

BSNT_04887___    201 LDLLFELNEKEGRTIVMVLHDLNLACRYAHHLVAIKDKRIYAEGRPEEVI    250
                     |||||||||||.||||||||||||||||||:|||||||:|||||||||||
RBAM_030060__    179 LDLLFELNEKEKRTIVMVLHDLNLACRYAHYLVAIKDKQIYAEGRPEEVI    228

BSNT_04887___    251 TCDLVQNVFSMNCQVTQDPLFGTPLCIPHGRGRCIVQEAAFTSHG-    295
                     ||:|||.||:||||||||||||||||||||||||||||||.|:.. 
RBAM_030060__    229 TCELVQQVFAMNCQVTQDPLFGTPLCIPHGRGRCIVQEAALTARLS    274


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