Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04639 and RBAM_028590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence pep-align/BSNT_04639___pbpD.1.9828.seq
# -bsequence pep-align/RBAM_028590___pbpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04639___pbpD-RBAM_028590___pbpD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04639___pbpD-RBAM_028590___pbpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04639___pbpD
# 2: RBAM_028590___pbpD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity: 528/624 (84.6%)
# Similarity: 576/624 (92.3%)
# Gaps: 2/624 ( 0.3%)
# Score: 2810.0
#
#
#=======================================
BSNT_04639___ 1 --MLRKIIGWILLLCIIPLFAFTVIASGKEVKQMKSLDQVLDKNINLKDI 48
|:||||||||||.||||.|||||||||||||:|..||||||:|:||.|
RBAM_028590__ 1 MTMVRKIIGWILLLGIIPLCAFTVIASGKEVKQIKPFDQVLDKHIDLKAI 50
BSNT_04639___ 49 SLVQNSYMYDRDGSLVSEIVSDHENRVLVPFNNIPEEVKQIFLTSEDRHF 98
:||||||||||||||||||||||||||:||||.||.||||:|||||||||
RBAM_028590__ 51 NLVQNSYMYDRDGSLVSEIVSDHENRVIVPFNKIPNEVKQLFLTSEDRHF 100
BSNT_04639___ 99 YEHKGFDFMGMVRATASNVKDKKIDQGASTITQQLSRNLYLSHERSFSRK 148
||||||||||||||.|||.||.|||||||||||||:||:||||||:||||
RBAM_028590__ 101 YEHKGFDFMGMVRAAASNFKDHKIDQGASTITQQLARNVYLSHERTFSRK 150
BSNT_04639___ 149 LTELAYSYQLEKKYTKNEILEAYLNTIYFNNGVYGVGSAAQFYFSKPLKS 198
||||||||||||||:|:||||.||||||||||||||||||||||||||||
RBAM_028590__ 151 LTELAYSYQLEKKYSKDEILEGYLNTIYFNNGVYGVGSAAQFYFSKPLKS 200
BSNT_04639___ 199 LTVGEMAFICAIPNNPTLYDPLKHFDYTKSRQERLLKGLKDAGVITDKEL 248
||:||||||||||||||||||||||||||.||.|||.|||.||||:.|:|
RBAM_028590__ 201 LTLGEMAFICAIPNNPTLYDPLKHFDYTKKRQVRLLNGLKKAGVISGKQL 250
BSNT_04639___ 249 KKAVKQKIKLDVEKREDKYPDYVSYVNDEFTQLVSESEGFDKRLQKASGK 298
|||.|:|||||:.::.:||||||||||||||||||.|||:||||:|||||
RBAM_028590__ 251 KKAEKEKIKLDINEKTNKYPDYVSYVNDEFTQLVSSSEGYDKRLEKASGK 300
BSNT_04639___ 299 QKEKIENELSARVSTLMKDGVKIYTALDPYMQNQVVAQMNSKLPYADVQG 348
.|:||::|||.|||||:||||||||||:||||||||||:|..||||.|||
RBAM_028590__ 301 AKQKIQSELSDRVSTLLKDGVKIYTALNPYMQNQVVAQVNQNLPYAGVQG 350
BSNT_04639___ 349 GAAVINHQTHQIIALSGGKNYQKYDFNRAYQAYRQPGSSIKPLLDYGPYI 398
|||||||||||||||||||:|.||||||||||||||||||||||||||||
RBAM_028590__ 351 GAAVINHQTHQIIALSGGKDYHKYDFNRAYQAYRQPGSSIKPLLDYGPYI 400
BSNT_04639___ 399 EQTGATASSTIDASKFCSKDYCPQNYNNRTYGTVTLDTAFKNSYNTPAIR 448
|:||||..|.||||||||.|||||||||||||||||:||||.||||||||
RBAM_028590__ 401 EKTGATPHSKIDASKFCSADYCPQNYNNRTYGTVTLETAFKYSYNTPAIR 450
BSNT_04639___ 449 MLDRVGIQKAFSYIEPYHFAKLVDSDYLLPAALGGFTNGMTPLEMTKAYT 498
::||||:.|||||:||:||||||.:||.||||||||||||||||||.|||
RBAM_028590__ 451 IMDRVGVNKAFSYLEPFHFAKLVSADYRLPAALGGFTNGMTPLEMTNAYT 500
BSNT_04639___ 499 TFGNSGSYTPSHAITKVTDLKGKTLYKWNDKATQIFSVRTNMQLKKLMSS 548
||||:|.|||||||||||||||||:.||.|:.||:||||||||:|::|.:
RBAM_028590__ 501 TFGNNGVYTPSHAITKVTDLKGKTILKWKDEPTQVFSVRTNMQIKEMMKA 550
BSNT_04639___ 549 VVKSGTGKKAYFNAPYIGGKTGTSNDYHDMWFVGLTDTYTMGVWVGKDTP 598
||||||||||.|.|||:|||:||||||||||||||||.||||||||||||
RBAM_028590__ 551 VVKSGTGKKANFKAPYVGGKSGTSNDYHDMWFVGLTDAYTMGVWVGKDTP 600
BSNT_04639___ 599 TSVEYLHSISPQLSIWKGTLQAAY 622
:||||||..||||||||.||||||
RBAM_028590__ 601 SSVEYLHDASPQLSIWKNTLQAAY 624
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