Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04483 and RBAM_027790

See DNA alignment / Visit BSNT_04483 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:59
# Commandline: needle
#    -asequence pep-align/BSNT_04483___ytxM.1.9828.seq
#    -bsequence pep-align/RBAM_027790___ytxM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04483___ytxM-RBAM_027790___ytxM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04483___ytxM-RBAM_027790___ytxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04483___ytxM
# 2: RBAM_027790___ytxM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 274
# Identity:     186/274 (67.9%)
# Similarity:   220/274 (80.3%)
# Gaps:           0/274 ( 0.0%)
# Score: 1001.0
# 
#
#=======================================

BSNT_04483___      1 MGTVNITVSDGIRYAVADEGPNASEAVVCLHGFTGSKQSWTFLDEMLSDS     50
                     |.||.:..:||:.|..||.|..:|||:||||||||||:||.||..|....
RBAM_027790__      1 METVTVKTADGVCYRAADSGHESSEAIVCLHGFTGSKESWMFLRGMFPGE     50

BSNT_04483___     51 RLIKIDCLGHGETDAPLNGKRYSTSRQVSDLAEILNQLKLHKVKLIGYSM    100
                     |::.||||||||||||:...|||.||||:|||.:.:||||||||||||||
RBAM_027790__     51 RMVMIDCLGHGETDAPVQAARYSASRQVADLAAVFDQLKLHKVKLIGYSM    100

BSNT_04483___    101 GGRLAYSFAMTYPERVSALVLESTTPGLKTLGERRERIMRDRKLADFILR    150
                     |||||||||..:|.||||||||||||||.||.||::||..||||||||||
RBAM_027790__    101 GGRLAYSFAQAFPHRVSALVLESTTPGLSTLQERKKRIQSDRKLADFILR    150

BSNT_04483___    151 DGLKAFVAYWENIPLFSSQQRLAEDIRHRIRSGRLRNNKIGLANSLTGMG    200
                     :|:.:||.|||.||||::|..|.:.::..||:|||:||..|||.||.|||
RBAM_027790__    151 EGITSFVDYWEGIPLFATQLSLPDSVKASIRAGRLKNNPSGLAGSLLGMG    200

BSNT_04483___    201 TGSQPSFWSRVEEIDVPVLLICGEWDEKFCAINQEVHKMLPSSRIEIVPK    250
                     ||||||:|..:..|..||||||||||||||||||:||.:||||:||:|.:
RBAM_027790__    201 TGSQPSWWEALHRIKAPVLLICGEWDEKFCAINQKVHNLLPSSKIEVVKQ    250

BSNT_04483___    251 AGHTVHVEQPRLFGKIVSEFLTSI    274
                     |||||||||||:|||||||||..:
RBAM_027790__    251 AGHTVHVEQPRIFGKIVSEFLYGL    274


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.