Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04452 and RBAM_027600

See DNA alignment / Visit BSNT_04452 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence pep-align/BSNT_04452___ytmA.1.9828.seq
#    -bsequence pep-align/RBAM_027600___ytmA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04452___ytmA-RBAM_027600___ytmA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04452___ytmA-RBAM_027600___ytmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04452___ytmA
# 2: RBAM_027600___ytmA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     205/257 (79.8%)
# Similarity:   238/257 (92.6%)
# Gaps:           0/257 ( 0.0%)
# Score: 1146.0
# 
#
#=======================================

BSNT_04452___      1 MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRG     50
                     |:|||:||||||.|:||:.:||.|.||:|||||||||.||.|||||||||
RBAM_027600__      1 MLVEKKRFPSPSPHIRLFEVCYESEGLKVKGLLAEPAAPGTYDGFLYLRG     50

BSNT_04452___     51 GIKSVGMVRPGRIIQFASQGFVVFAPFYRGNQGGEGNEDFAGEDREDAFS    100
                     |||:|||||||||:||||||||||||:|||||||||||||||||||||||
RBAM_027600__     51 GIKNVGMVRPGRIVQFASQGFVVFAPYYRGNQGGEGNEDFAGEDREDAFS    100

BSNT_04452___    101 AFRLLQQHPNVKKDRVHIFGFSRGGIMGMLTAIEMGGQAASFVSWGGVSD    150
                     |||||::.|||::.||||||||||||||:|||||||.||||.||||||||
RBAM_027600__    101 AFRLLREQPNVREGRVHIFGFSRGGIMGLLTAIEMGHQAASLVSWGGVSD    150

BSNT_04452___    151 MILTYEERQDLRRMMKRVIGGTPKKVPEEYQWRTPFDQVNKIQAPVLLIH    200
                     |:||||||:|:||||||||||||||||:||:||:||:..::|||||||||
RBAM_027600__    151 MVLTYEERKDMRRMMKRVIGGTPKKVPDEYRWRSPFENADRIQAPVLLIH    200

BSNT_04452___    201 GEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPPKENRRIVRQL    250
                     ||.|:||||:|:.::|:|||:..|||||||||.|||||||:|||||||:|
RBAM_027600__    201 GENDENVSIEHARMIEDKLKEAGKPVETWYYSGFTHYFPPQENRRIVRRL    250

BSNT_04452___    251 TQWMKNR    257
                     .:|||.|
RBAM_027600__    251 AEWMKTR    257


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.