Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_03099 and RBAM_026610

See DNA alignment / Visit BSNT_03099 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence pep-align/BSNT_03099___yokH.1.9828.seq
#    -bsequence pep-align/RBAM_026610___yokH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03099___yokH-RBAM_026610___yokH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03099___yokH-RBAM_026610___yokH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03099___yokH
# 2: RBAM_026610___yokH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 212
# Identity:      92/212 (43.4%)
# Similarity:   130/212 (61.3%)
# Gaps:          38/212 (17.9%)
# Score: 462.0
# 
#
#=======================================

BSNT_03099___      1 MEFERLLLKGNKGVMYVTNFVHKTVNGLKSLLDEKGAIQLFCSEGDTMEC     50
                                     :..||.||:.|||.|:||||.:::..:||..:|.
RBAM_026610__      1 ----------------MAVFVEKTLQGLKELIDEKGRLKILGNEGALLET     34

BSNT_03099___     51 LVTFSPDKATLNDIQSFEAKHQITLPEDYQKFMTLHNGAKIFEILSDGEN    100
                     ...|... ||..:|:|||.|.:::|||||:.|:.|||||:||::|..|||
RBAM_026610__     35 ECIFFKG-ATDLEIESFEKKIKVSLPEDYKTFLKLHNGARIFDLLFYGEN     83

BSNT_03099___    101 IGGGLQLFSLEEIEEELKYEDLFEDING------IPIGYLLEECHLMIDK    144
                     :||||.:.::||||:.::        ||      ||:.:||:.|:|:|||
RBAM_026610__     84 VGGGLHILNVEEIEKYMQ--------NGFLKPQFIPVAHLLDGCYLLIDK    125

BSNT_03099___    145 DKVNQGDPNYLYIFESGLEYNPLNLNFEKFLDRYILANGEPFWDWRYYTA    194
                     .|::. |||||: |...:||.|:.||||.||||||::.|..||:|..|||
RBAM_026610__    126 TKMST-DPNYLW-FRGFVEYEPMQLNFEIFLDRYIMSQGANFWEWNIYTA    173

BSNT_03099___    195 ENYYRTR-----    201
                     ||||||.     
RBAM_026610__    174 ENYYRTHQGDED    185


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.