Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04002 and RBAM_024690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence pep-align/BSNT_04002___yrvJ.1.9828.seq
# -bsequence pep-align/RBAM_024690___yrvJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04002___yrvJ-RBAM_024690___yrvJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04002___yrvJ-RBAM_024690___yrvJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04002___yrvJ
# 2: RBAM_024690___yrvJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity: 376/568 (66.2%)
# Similarity: 433/568 (76.2%)
# Gaps: 55/568 ( 9.7%)
# Score: 1972.0
#
#
#=======================================
BSNT_04002___ 1 MHTFLIVFTLSINKSFYFYLKIRKDFTILNKNAFLMIIRKEDTMNKKYFV 50
|.|:...
RBAM_024690__ 1 -------------------------------------------MKKRTLA 7
BSNT_04002___ 51 LIVCIIFTAALFPTFSSVTAAQGEAVIATDETNVRSGPGLSYGITAEVKK 100
||:|.:...||.|:|.:..||:||||||||:.|||.||||||||.|||||
RBAM_024690__ 8 LILCGVIITALLPSFHTAIAAEGEAVIATDKINVRGGPGLSYGIKAEVKK 57
BSNT_04002___ 101 GERYPILKEDGDWVQIQLGSGEKGWVVSWLITKEDQASTSSSGSSDTVTS 150
||||||.||:|||||:||..|:.||||||||:|....:..||.:|.||||
RBAM_024690__ 58 GERYPIAKEEGDWVQLQLSPGKTGWVVSWLISKTAGGADHSSATSGTVTS 107
BSNT_04002___ 151 TDPDLRMRSGPGTSYEVIGKFPQGSQASVIDKDSGWIKISYHSATGWVSS 200
||||||:|.|||||||||||.|||:.|||:||:|||:.|||...||||||
RBAM_024690__ 108 TDPDLRIRKGPGTSYEVIGKLPQGAHASVLDKNSGWVNISYQGTTGWVSS 157
BSNT_04002___ 201 EYVT--SGGSSSASDESDQTEDSGASTTGTVGVSSLNVRASASHDAAIIT 248
|||| |||| ::..|.....|..|||||||||||::||||:||:|
RBAM_024690__ 158 EYVTADSGGS-----DTKATSARSGSKNGTVGVSSLNVRSAASHDSAIMT 202
BSNT_04002___ 249 KLDRGTKLTVLNEKNGWAHIEVNGLKGWVASHYLLTSSVPADDSANAG-- 296
||.||||:::|:|.:||..||.||.|||.||||::..|..:|.::.:|
RBAM_024690__ 203 KLSRGTKVSILSEDHGWLKIEANGQKGWAASHYIIKDSDSSDSASGSGDG 252
BSNT_04002___ 297 --SSSSAKKAYIMYGGTNLRSDASTSASIVERAAKGDSYTITGSKGSWYE 344
.|.|:|||||:||||||||.||||||||:||.||.:|.|.||.|.|||
RBAM_024690__ 253 SAGSGSSKKAYIVYGGTNLRSSASTSASIVKRADKGAAYPIVGSSGKWYE 302
BSNT_04002___ 345 IKLDNGQTAYVANWVVQTSKSAEEAGEPPVSDSPSGNGSLNNKTIIVDPG 394
::|:||||||||||||||.||.||.||.|..|:..|:|||.||||:||||
RBAM_024690__ 303 VRLENGQTAYVANWVVQTLKSGEETGEAPSPDTSGGSGSLKNKTIVVDPG 352
BSNT_04002___ 395 HGGKDSGTIGYSGKFEKNLTIKTAKLLASKLRSAGADVYVTRQDDTFVSL 444
||||||||||||||||||:|||||||||.|||:|||:||:|||||||:||
RBAM_024690__ 353 HGGKDSGTIGYSGKFEKNVTIKTAKLLAQKLRAAGANVYITRQDDTFISL 402
BSNT_04002___ 445 QSRVSTSHYRNADAFISIHYDSYADTSTRGSTAYYYSPAKDQELASDVHS 494
|:||||||||||||||||||||||||||||||||||||:||::|||||||
RBAM_024690__ 403 QARVSTSHYRNADAFISIHYDSYADTSTRGSTAYYYSPSKDRQLASDVHS 452
BSNT_04002___ 495 EVVKRSSIPDRGVLFGDYYVLRENRQPAMLYELGYVSHPQEEAIVHSNSY 544
||||||.|||||||||||||||||:||||||||||:|.||||.|:||.||
RBAM_024690__ 453 EVVKRSPIPDRGVLFGDYYVLRENKQPAMLYELGYLSQPQEETIIHSGSY 502
BSNT_04002___ 545 QEKVTDGIESGLEKYFQ- 561
|||||||||||||.|||
RBAM_024690__ 503 QEKVTDGIESGLEHYFQS 520
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