Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03936 and RBAM_024260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence pep-align/BSNT_03936.1.9828.seq
# -bsequence pep-align/RBAM_024260___yrhJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03936-RBAM_024260___yrhJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03936-RBAM_024260___yrhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: RBAM_024260___yrhJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1056
# Identity: 500/1056 (47.3%)
# Similarity: 600/1056 (56.8%)
# Gaps: 304/1056 (28.8%)
# Score: 2655.0
#
#
#=======================================
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 1 MKQLSAIPQPKTYGPLKNLPHLEKEKLSQSLWKIAEEYGPIFRFEFPSSV 50
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 51 GVFVSGRELAAEVCDEKRFDKNLSKALLKVREFGGDGLFTSWTHEKNWQK 100
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 101 AHRILLPSFSQKAMKGYHSMMLDIAMQLVQKWSRLNPNEEIDVAEDMTRL 150
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 151 TLDTIGLCGFHYRFNSFYRDTQHPFITSMLRALQEAMRQSQRHSLQDKLM 200
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 201 IKTRHQFQQDIEEMNSLVDRIIAERRENPDENLSDLLALMLEAKDPVTGE 250
BSNT_03936 1 -------------------------------------------------M 1
:
RBAM_024260__ 251 RLDDENIRYQIITFLIAGHETTSGLLSFAIYCLLKNKDKLKKAVQEAERV 300
BSNT_03936 2 LTDDTPEYKQIQQLKYTRMVLNETLRLYPTAPAFSLYAKEDTVLGGEYPI 51
||.:||||||||||.|.|||||||||||||||||||||||||||||:|||
RBAM_024260__ 301 LTGETPEYKQIQQLTYIRMVLNETLRLYPTAPAFSLYAKEDTVLGGKYPI 350
BSNT_03936 52 SKGQPVTVLIPKLHRDQNAWGPDAEDFRPERFEDPSSIPHHAYKPFGNGQ 101
:||||||:|.|:||||::|||.|||.||||||.||::||..|||||||||
RBAM_024260__ 351 AKGQPVTILTPQLHRDKSAWGEDAELFRPERFSDPAAIPADAYKPFGNGQ 400
BSNT_03936 102 RACIGMQFALQEATMVLGLVLKHFELINHTGYELKIKEALTIKPDDFKIT 151
|||||||||||||||||||||||||||:||.|||.|||||||||.||||.
RBAM_024260__ 401 RACIGMQFALQEATMVLGLVLKHFELIDHTDYELTIKEALTIKPGDFKIR 450
BSNT_03936 152 VKPRKTAAINVQRKEQAEIKAETKPKETK--PKHGTPLLVLYGSNLGTAE 199
||.:..: |.|..:..:.:.....:||| |.||||||:||||||||||
RBAM_024260__ 451 VKNKDVS--NHQPVQNHKAEGSGHKEETKEIPSHGTPLLILYGSNLGTAE 498
BSNT_03936 200 GIADELASQGRQMGFTAETAPLDDYIGKLPEEGAVVIVTASYNGSPPDNA 249
|||:|||..||..||:.|:.|||||.||||.:||||||||||||:|||||
RBAM_024260__ 499 GIAEELADIGRSKGFSTESGPLDDYAGKLPVKGAVVIVTASYNGAPPDNA 548
BSNT_03936 250 AGFVEWLKELEEGQLKGVSYAVFGCGNRSWASTYQRIPRLIDDMMKAKGA 299
||||:|::.||:.:||||||||||||:|:||:||||||||||.:::.|||
RBAM_024260__ 549 AGFVKWMETLEDQELKGVSYAVFGCGDRNWAATYQRIPRLIDKVLEEKGA 598
BSNT_03936 300 SRLTEIGEGDAADDFESHRESWENRFWKETMDAFDINEIAQKEDRPSLSI 349
.|||.|||||.|||||..:|:||:.|||:.|.||.|....::.::..|||
RBAM_024260__ 599 KRLTSIGEGDNADDFEYSQEAWEDSFWKDIMKAFHIEAAPKQTNKSQLSI 648
BSNT_03936 350 AFLSEATETPVAKAYGAFEGVVLENRELQTADSTRSTCHIELEIPAGKTY 399
.::|||.|||:||.|.|||..|:.|:||.|..|.||..||||.:|..:||
RBAM_024260__ 649 EYVSEAAETPIAKTYKAFEAEVITNKELHTESSKRSVRHIELRLPETETY 698
BSNT_03936 400 KEGDHIGILPKNSRELVQRVLSRFGLQSNHVIKVSGSAHMAHLPMDRPIK 449
:||||:|:||:||.||:.||:.||||..|...|:.| ..:.|||||||:.
RBAM_024260__ 699 QEGDHLGVLPQNSGELISRVIRRFGLDPNQHFKIKG-RQLPHLPMDRPVN 747
BSNT_03936 450 VADLLSSYVELQEPASRLQLRELASYTVCPPHQKELEQLVSDDGIYKEQV 499
..:||:|||||||||:|.||||||::|||||||||||.|.|||..|||.|
RBAM_024260__ 748 APELLASYVELQEPATRAQLRELAAHTVCPPHQKELEHLYSDDAAYKENV 797
BSNT_03936 500 LAKRLTMLDFLEDYPACEMPFERFLALLPSLKPRYYSISSSPKVHANIVS 549
|..|:||||.||||||||:||||||.||||||.||||||||||..:..:|
RBAM_024260__ 798 LKNRMTMLDLLEDYPACELPFERFLELLPSLKARYYSISSSPKATSGELS 847
BSNT_03936 550 MTVGVVKASAWSGRGEYRGVASNYLAELNTGDAAACFIRTPQSGFQMPDE 599
:|||||.|.|||||||||||||||||.|..||:|.||||:|||||.:|:.
RBAM_024260__ 848 ITVGVVTAPAWSGRGEYRGVASNYLAGLQKGDSAVCFIRSPQSGFALPEN 897
BSNT_03936 600 PETPMIMVGPGTGIAPFRGFIQARSVLKKEGSTLGEALLYFGCRRPDHDD 649
|:||:||||.||||||||||||||:..|..|::||||.||||||.|:.||
RBAM_024260__ 898 PKTPLIMVGAGTGIAPFRGFIQARAAEKMSGNSLGEAHLYFGCRHPEQDD 947
BSNT_03936 650 LYREELDQAEQEGLVTIRRCYSRVKNEPKEYVQHLLKQDTQKLMTLIEKG 699
||::|.|.||:.||||:.|.|||:..:.|.|||.:|.::..:::.|:::|
RBAM_024260__ 948 LYKDEFDHAEKNGLVTVHRAYSRLDQDCKVYVQDVLLREAAQIIALLDQG 997
BSNT_03936 700 AHIYVCGDGSQMAPDVEKTLRLAYEAEKGASQEESAEWLQKLQDQRRYVK 749
.|:|:|||||:|||.||..|..|||.......:.|..||::||.:.||.|
RBAM_024260__ 998 GHLYICGDGSKMAPAVENVLLQAYEKVHNTDSKVSLNWLEQLQAEGRYAK 1047
BSNT_03936 750 DVWTGM 755
|||.||
RBAM_024260__ 1048 DVWAGM 1053
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