Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03888 and RBAM_024140

See DNA alignment / Visit BSNT_03888 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_03888___yrdA.1.9828.seq
#    -bsequence pep-align/RBAM_024140___yrdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03888___yrdA
# 2: RBAM_024140___yrdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 167
# Identity:     155/167 (92.8%)
# Similarity:   160/167 (95.8%)
# Gaps:           1/167 ( 0.6%)
# Score: 823.0
# 
#
#=======================================

BSNT_03888___      1 MFQTLDHFLKSWEFEADATQKLLNNLTDESLKQEITSQNWTLGRIAWHTV     50
                     ||||||||||||||||||||||||:|||||||||||||:|||||||||||
RBAM_024140__      1 MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTV     50

BSNT_03888___     51 AAIRIITSNTDLTFHAPAEDYPVPTSAQFIADSYHQASNAFVQALKTQWT    100
                     |||.||||||||||||||||||||.||:|||:||||||||||||||||||
RBAM_024140__     51 AAIHIITSNTDLTFHAPAEDYPVPASARFIAESYHQASNAFVQALKTQWT    100

BSNT_03888___    101 DHTLQERINFIGQQLPNGSLLMFLIQHQNHHRGQMTVLMRQAGLTVPGIY    150
                     |.||||.:||||||||||||||||||||||||||||||||||||.|||||
RBAM_024140__    101 DDTLQECVNFIGQQLPNGSLLMFLIQHQNHHRGQMTVLMRQAGLPVPGIY    150

BSNT_03888___    151 GPAKEEWAKFGLEAPKM    167
                     |||||||.|||||||| 
RBAM_024140__    151 GPAKEEWIKFGLEAPK-    166


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