Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03711 and RBAM_023180

See DNA alignment / Visit BSNT_03711 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence pep-align/BSNT_03711___yqgQ.1.9828.seq
#    -bsequence pep-align/RBAM_023180___yqgQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03711___yqgQ-RBAM_023180___yqgQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03711___yqgQ-RBAM_023180___yqgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03711___yqgQ
# 2: RBAM_023180___yqgQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 71
# Identity:      43/71 (60.6%)
# Similarity:    57/71 (80.3%)
# Gaps:           6/71 ( 8.5%)
# Score: 232.0
# 
#
#=======================================

BSNT_03711___      1 MNTFYDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWAR     50
                     ||:|||||||.|:||||||||||:.||:||.|||||:|::::||:|.|.:
RBAM_023180__      1 MNSFYDVQQLFKSFGHIVYFGDRQAEIDFMKDELKEMYLSNVIERELWQK     50

BSNT_03711___     51 AAAVLRKELEQTKNGRDFYKG     71
                     ||.||::|.|:.| ||     
RBAM_023180__     51 AAGVLQRESERIK-GR-----     65


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.