Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03673 and RBAM_022960

See DNA alignment / Visit BSNT_03673 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:57
# Commandline: needle
#    -asequence pep-align/BSNT_03673___yqxM.1.9828.seq
#    -bsequence pep-align/RBAM_022960___yqxM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03673___yqxM-RBAM_022960___yqxM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03673___yqxM-RBAM_022960___yqxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03673___yqxM
# 2: RBAM_022960___yqxM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     121/253 (47.8%)
# Similarity:   173/253 (68.4%)
# Gaps:          30/253 (11.9%)
# Score: 659.5
# 
#
#=======================================

BSNT_03673___      1 MFRLFYNQQKAKTKLKVLLIFQLSVIFSLTAAICLQFSDDTSAAFHDIET     50
                     ||||...::|.|.:.:::|..:||.||.|:..||.||:.|||::|:|:::
RBAM_022960__      1 MFRLLRMEKKGKVRWRMMLFLRLSFIFCLSVTICAQFTGDTSSSFNDVKS     50

BSNT_03673___     51 FDVSLQTCKDFQHTDKNCHYDKRWDQSDLHISDQTDTKGTVCSPFALFAV    100
                     |.:.:|||.|||:||.:|.||:|||||||||::||||.||||:|..|:|.
RBAM_022960__     51 FSLQVQTCGDFQYTDDDCRYDERWDQSDLHITNQTDTSGTVCAPLQLYAE    100

BSNT_03673___    101 LENTGEKLKKSKWKWELHKLENARKPLKDGNVIEKGFVSNQIGDSLYKIE    150
                     |||.|::...|.|||||||:.:.::||::|||::||.::::...::||||
RBAM_022960__    101 LENKGKERTVSDWKWELHKIASQQQPLRNGNVVDKGLITDKKSKTIYKIE    150

BSNT_03673___    151 TKKKMKPGIYAFKVYKPAGYPANGSTFEWSEPMTLAKCDEKPTVPKKETK    200
                     :|:.::|||||||||||.||||:...||||:|:.|.||.|:.||      
RBAM_022960__    151 SKRSLQPGIYAFKVYKPEGYPADEEKFEWSKPIKLVKCREQTTV------    194

BSNT_03673___    201 SDVKKENETTQKDIQEKTMKEETSQEAVTKENETQSDQKESGEEDEKSNE    250
                     ||:||    |:|:..|..                    ||||||.||:.|
RBAM_022960__    195 SDLKK----TEKEPAEPV--------------------KESGEEHEKNAE    220

BSNT_03673___    251 ADQ    253
                     .||
RBAM_022960__    221 TDQ    223


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