Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03352 and RBAM_020680

See DNA alignment / Visit BSNT_03352 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence pep-align/BSNT_03352___ypjB.1.9828.seq
#    -bsequence pep-align/RBAM_020680___ypjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03352___ypjB-RBAM_020680___ypjB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03352___ypjB-RBAM_020680___ypjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: RBAM_020680___ypjB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 266
# Identity:     184/266 (69.2%)
# Similarity:   222/266 (83.5%)
# Gaps:           8/266 ( 3.0%)
# Score: 960.5
# 
#
#=======================================

BSNT_03352___      1 MKRKLTICLLIALIFYNGNAKAAERGSLEELNDLSDTVFQMTRQAKYEEA     50
                     ||||||||||:||:.:...|||.:.|.|:||||||||||||||.::|:||
RBAM_020680__      1 MKRKLTICLLLALMCFITTAKAEDEGGLKELNDLSDTVFQMTRHSQYDEA     50

BSNT_03352___     51 LQVLEYFEKTLKSAEKKQQDPMLTGSQIRQITLGYNDMVRSLKQADTSDT    100
                     ||||.||:|.:.....      |:|:::||:|||:||:||.|||||.|||
RBAM_020680__     51 LQVLGYFKKKMTHVNS------LSGAEVRQVTLGFNDLVRVLKQADASDT     94

BSNT_03352___    101 QKLRAAAQFRMLMDAVENRSDPLWGSLEKPIMEAFTELKRDVQKNGSTSF    150
                     :|:|||||||::|||:|:.|||||||||:|||..|:.||.||..|||.:|
RBAM_020680__     95 EKIRAAAQFRLVMDAMEDHSDPLWGSLERPIMATFSALKEDVSGNGSENF    144

BSNT_03352___    151 HEKWNEFISLYDLIYPSLTIDVSEDQLETVGKHIDVIEQEEFQQMTESTK    200
                     :||||||||||||||||||:|||..||:||.|||:||||:.|||||:.||
RBAM_020680__    145 NEKWNEFISLYDLIYPSLTMDVSAGQLDTVAKHIEVIEQDGFQQMTKGTK    194

BSNT_03352___    201 LERLSLLQHDLKNVFDRVEEDDADPSLLWVMITTGSIIITALTYVGYRKY    250
                     ||||:|||.|||.|||:||.||||||||||::|||.||||||||||||||
RBAM_020680__    195 LERLTLLQQDLKRVFDKVERDDADPSLLWVILTTGGIIITALTYVGYRKY    244

BSNT_03352___    251 KAEKNKLKKRDYPK--    264
                     :|||.|.|||:|||  
RBAM_020680__    245 RAEKKKEKKREYPKSK    260


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