Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03284 and RBAM_020180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence pep-align/BSNT_03284___ypbR.1.9828.seq
# -bsequence pep-align/RBAM_020180___ypbR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03284___ypbR-RBAM_020180___ypbR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03284___ypbR-RBAM_020180___ypbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03284___ypbR
# 2: RBAM_020180___ypbR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity: 721/1199 (60.1%)
# Similarity: 928/1199 (77.4%)
# Gaps: 13/1199 ( 1.1%)
# Score: 3716.5
#
#
#=======================================
BSNT_03284___ 1 MTDQNR--KELLHKTGELYKQFIENQDEQRAAKLAAVMKKAADEEVYIAF 48
||::.| :|:..:||.||.||:::|||:||.:|||:|||||||||||||
RBAM_020180__ 1 MTEEERHNREIFSRTGALYAQFLDHQDEKRADQLAAIMKKAADEEVYIAF 50
BSNT_03284___ 49 TGHYSAGKSSLLNCLLMENILPTSPIPTSANLVVIRNGEKRVRLHTTDGA 98
|||||||||||||.||.|:|||||||||||||||||:|..:|.|||||||
RBAM_020180__ 51 TGHYSAGKSSLLNTLLGEDILPTSPIPTSANLVVIRHGADKVVLHTTDGA 100
BSNT_03284___ 99 CAELEGAYQKDKVQQYCKDGEQIESVEIFDRYTEIDSGVAYIDTPGIDST 148
.||::|:|.|::|||:||||||||:||::..:.|.:...|||||||||||
RBAM_020180__ 101 YAEIKGSYDKEQVQQFCKDGEQIETVEVYAGFKESEPYAAYIDTPGIDST 150
BSNT_03284___ 149 DDAHFLSAASILHQADALFYVVHYNHVHSEENVKFLRSIKESIPNVYFIV 198
|:||||||||:|||||||||||||||||||||:.||.|||:.|.|::.||
RBAM_020180__ 151 DEAHFLSAASVLHQADALFYVVHYNHVHSEENMLFLSSIKDRISNLFLIV 200
BSNT_03284___ 199 NQIDRHDETETKFGDYKAQVEEMLCNEGISKEALYFTSVTEPDHPFNQMG 248
||||||:||||||.:|:.|||:||...||.||:|:||||||||||.|.|.
RBAM_020180__ 201 NQIDRHNETETKFEEYRRQVEDMLEGAGIPKESLFFTSVTEPDHPLNGME 250
BSNT_03284___ 249 ALREELRRIEQQSKSNMQALTEQKVRNLLKEHTEMLKKDETGAPSFAEQL 298
.|::.|::::||:|:|:.:|||:||.:|:|||||||.||:.... .||.
RBAM_020180__ 251 QLKKHLQKLKQQAKTNLWSLTERKVAHLVKEHTEMLVKDDKNGS--GEQF 298
BSNT_03284___ 299 NIQTGLVQSLRDQFNEAEKQTTEAEKRMQEEINLILKNANLTPFEMRELA 348
:.|..||:|:..:..:|.:|...|||.:::::..||:|||||||||||||
RBAM_020180__ 299 DKQEALVRSVEGELKKAVQQAETAEKDIRKDVQNILQNANLTPFEMRELA 348
BSNT_03284___ 349 AAFLESQEPSFKTGFFFSKAKTAQERDKRRNAFFSDVAKRTEAEADWHMI 398
:|::|||:||||||.||||||||.|:::|...||:|:.||||.|||||:|
RBAM_020180__ 349 SAYIESQQPSFKTGLFFSKAKTALEKERRHAEFFADIKKRTEGEADWHII 398
BSNT_03284___ 399 DTLHKLAKAFDVYTAESEKLIQAYRTPLDISIIERAVKHGAAFSSEYVLQ 448
||..|.||.::..:.|..|.||||||||...|..:|:|.||||||||||.
RBAM_020180__ 399 DTFTKAAKRYEADSDELIKKIQAYRTPLSDDITAQALKQGAAFSSEYVLT 448
BSNT_03284___ 449 YTKDLAELIRKEAKREAADIIKVLSAMVKERVSKDVQTINDRLVQESEKL 498
|||||||:||:||||:.|::|:.|:|.|:.:....::.:.:||.:|.:..
RBAM_020180__ 449 YTKDLAEMIRREAKRQTAELIEELTAYVQTKNGPLIENLKNRLEKEKKIR 498
BSNT_03284___ 499 VFLQEQARLENNAREKTDRLWAIWEEESACPMHIDT---EWFKSKKTRVA 545
..|.:.|:.|.||.||..|:.|:||||..| || :|:..||....
RBAM_020180__ 499 DELAQSAKEERNALEKAARVRALWEEELTC----DTGSGDWYTRKKRLAK 544
BSNT_03284___ 546 APEQKQGRSQLTAQPMPKSEIKMEQEMPLQDQIKRFYTLSDLLGECSMLL 595
||.||:.: :.....:.|.|....:|:|:::|..|||.|:.:|...|:|.
RBAM_020180__ 545 APVQKKPK-EAVQHEVSKPEKNAMKELPIKEQTDRFYELAGILESSSILG 593
BSNT_03284___ 596 KQTSAFRERVKRLEERKFTLALFGGFSSGKSSFANALVGERVLPSSPTPT 645
||..|||.|::|||.|:|||||||||||||||||||||||.|||||||||
RBAM_020180__ 594 KQAEAFRSRIERLENRQFTLALFGGFSSGKSSFANALVGEFVLPSSPTPT 643
BSNT_03284___ 646 TATINKITMPINGNLNKTADVVFKTEDDITAEILQLTGI-PKEPAGRSFT 694
||||||||.|.:|..:|:|::|||||:::.||:||||.: ..:..|||..
RBAM_020180__ 644 TATINKITKPQDGKPHKSAEIVFKTEEELDAEMLQLTELKDADVKGRSLK 693
BSNT_03284___ 695 EKWEKAVKKNRLQEEHVKLISNFLLAYEKYQQYIQEQKKLTIPLSELKPY 744
|:|..|:||.::.:|.:.:|...|.|::.|::.|:::..||:|:.:||||
RBAM_020180__ 694 ERWNYAIKKGKIPDELIPVIQTMLQAFDTYEEQIRQRLTLTVPIEDLKPY 743
BSNT_03284___ 745 VAEETTACVVKEVTVYYTCPLTEKGITIVDTPGASSMNKRHTELAFQYIK 794
.|||.|||.||||||||..|||:|||||||||||||:|||||||||||||
RBAM_020180__ 744 AAEEKTACCVKEVTVYYDSPLTQKGITIVDTPGASSINKRHTELAFQYIK 793
BSNT_03284___ 795 DADAFFYMTYYQHSFSKGDRSFLRKLGLVKESLSMDKMFFIINAADLAKD 844
|||||||||||||||||||||||:|||||||:..||||||:||||||||.
RBAM_020180__ 794 DADAFFYMTYYQHSFSKGDRSFLKKLGLVKETFGMDKMFFVINAADLAKT 843
BSNT_03284___ 845 KTELETVTDYVSAELVKEGVYEPQLFTVSSKEELVGKPESFYNQFSKVRK 894
::|||||.|||.:||.|||:..|:|:.|||||||.||.|:|||:||.||.
RBAM_020180__ 844 ESELETVKDYVRSELSKEGINRPKLYHVSSKEELAGKKEAFYNRFSDVRT 893
BSNT_03284___ 895 HLDRFIEVDVKKASAAQLSSEADKLCETVFQLHQSQHQSREEKEAQKQRL 944
.|:.|||.||.:||.|||.:||||||:.|.|||:|.|||.||||.:||||
RBAM_020180__ 894 GLEHFIEEDVMRASCAQLKTEADKLCDMVEQLHESLHQSAEEKEKKKQRL 943
BSNT_03284___ 945 MLSFERTAADIEKRRNSKTIIEKVKKDTREQLYHIAQRLSYFANDLLKSA 994
..|:|:..|||.|||.|:.||.||.|||.||||||..||:::|||:||:|
RBAM_020180__ 944 ESSYEKALADISKRRTSEVIIRKVMKDTEEQLYHIKHRLTFYANDMLKTA 993
BSNT_03284___ 995 FHPGLQNGDWKKNVSKAMTTALHEYQFEYIQEIKTLDVRMSGFIERHINE 1044
|||||||||||:|:|.|:..||.|::||||||:||||:||:||||||:.|
RBAM_020180__ 994 FHPGLQNGDWKQNISAALNEALKEFRFEYIQELKTLDIRMTGFIERHMTE 1043
BSNT_03284___ 1045 EWLDQFQKTLNEDGYFSVYAGDQHSNGIQLKEVEPEIEERAFEQELKEVK 1094
||::..||.|.|||.||:|...::...:|||||.|.|:..||...:||||
RBAM_020180__ 1044 EWMENCQKKLMEDGDFSIYVSGENEFAVQLKEVAPVIDVTAFSHHVKEVK 1093
BSNT_03284___ 1095 SPKQFFEQKGKAAFIEAVRMKLTKITEAWIKNEEESLISHYTAHLRRLQE 1144
||||||||.|||||:|.:|:.|.|:||.|::.|:|||...|...:|||||
RBAM_020180__ 1094 SPKQFFEQNGKAAFVEGLRLSLQKVTEKWLEQEKESLSERYAEQVRRLQE 1143
BSNT_03284___ 1145 DMGEKAIAQITDQKETYLRGYAEGEHAKEIEMAYQACISWKNSDNTIKM 1193
||.:|:::||.:|::|||:|.||...|:|||..|:|..:||..|..:|:
RBAM_020180__ 1144 DMADKSLSQIREQRDTYLQGLAENTSAREIEHLYEAEKAWKKKDEMLKI 1192
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