Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02921 and RBAM_019970

See DNA alignment / Visit BSNT_02921 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence pep-align/BSNT_02921___thyA.1.9828.seq
#    -bsequence pep-align/RBAM_019970___thyA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02921___thyA-RBAM_019970___thyA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02921___thyA-RBAM_019970___thyA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02921___thyA
# 2: RBAM_019970___thyA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 280
# Identity:     104/280 (37.1%)
# Similarity:   154/280 (55.0%)
# Gaps:          17/280 ( 6.1%)
# Score: 481.0
# 
#
#=======================================

BSNT_02921___      1 MTQFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVMSKQMRF     50
                         .|||..:.:.::.||        ..|.|..||  .|:|....||||
RBAM_019970__      1 ----MKQYKDLCRHVLENG--------EKKGDRTGT--GTISTFGYQMRF     36

BSNT_02921___     51 DNSE-VPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNKMGVHIWDQWKQ     99
                     :..| .|:|||||:.:|:...||||..:..:| |..|.:.||.||::|..
RBAM_019970__     37 NLQEGFPMLTTKKLHFKSIAHELLWFLKGDTN-VRYLQENGVRIWNEWAD     85

BSNT_02921___    100 EDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWN    149
                     |:|.:|..||.| .:..|..:||.:||:..|:|.:|.||:|||.|...||
RBAM_019970__     86 ENGELGPVYGSQ-WRSWRGADGETIDQISRLIHDIKTNPNSRRLIVSAWN    134

BSNT_02921___    150 PDDLDAMSLTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVL    199
                     ..::|.|:|.||....|:||..|||..::..||.|:.||.|||:..|.:|
RBAM_019970__    135 VGEIDHMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALL    184

BSNT_02921___    200 QRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINP    249
                     ..|||.|||.|.||::...||.|:|..|::.:.:|:.|:....|:|....
RBAM_019970__    185 TMMIAHVTGLEPGEFVHTFGDVHIYQNHVEQVNLQLTRDVRPLPKLRFAR    234

BSNT_02921___    250 EVKDFYNFTIDDFKLINYKHGDKLLFEVAV    279
                     .|...::||.:||.:.:|.....:...|:|
RBAM_019970__    235 NVDSIFDFTFEDFIIEDYDPHPHIKGAVSV    264


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