Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03072 and RBAM_018730

See DNA alignment / Visit BSNT_03072 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence pep-align/BSNT_03072___yoxB.1.9828.seq
#    -bsequence pep-align/RBAM_018730___yoxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03072___yoxB-RBAM_018730___yoxB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03072___yoxB-RBAM_018730___yoxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03072___yoxB
# 2: RBAM_018730___yoxB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 258
# Identity:     134/258 (51.9%)
# Similarity:   175/258 (67.8%)
# Gaps:           7/258 ( 2.7%)
# Score: 679.5
# 
#
#=======================================

BSNT_03072___      1 MIVNHSCLKEFAEKLHSLPSSL--TKSDLLISPFHLHQENELDIYYSPHN     48
                     ||.:...|..|.::|.:|.||:  ||||||...|||.::.:||:||||||
RBAM_018730__      1 MICDRERLAHFLQQLKALSSSVGFTKSDLLTPAFHLAKDGDLDLYYSPHN     50

BSNT_03072___     49 EYINRTATIVIAGITPGFSQMKTAYETAVESLRQGRTLEQMAVDTKIAAG     98
                     ||||..|.:.|:||||||.||:.||:.|.:.|:.|.|||.:|.:||.|||
RBAM_018730__     51 EYINPYAVVAISGITPGFFQMQLAYKKAAQLLKDGETLETIAYETKKAAG    100

BSNT_03072___     99 FSGSMRHNLITMLDLCGLPQAFGIQSAAKLFGELRHMLHTTSVIKYPVFI    148
                     .|||||.|:|.||:.||||.|..::.:::||...|.:||||||||:|||.
RBAM_018730__    101 LSGSMRQNIIEMLNECGLPAALHVEDSSRLFDSKRELLHTTSVIKHPVFY    150

BSNT_03072___    149 QQKNYTGYKPAITRSPILSTYAFGHFPAELNHVTGPALLIPLGKAAETVC    198
                     :||||||::|||:||.:||.||...||.|:..:....||||||||||:.|
RBAM_018730__    151 KQKNYTGHRPAISRSALLSRYALTCFPDEIEMMKKDILLIPLGKAAESAC    200

BSNT_03072___    199 ETLIRQHSLQNLICLNGFPHPSGANGHRLKQFSKNKEQLETQIRSFAALF    248
                     ..|.:...:.:.:.|.||||||||||||.|||.:||:.|..||:.||...
RBAM_018730__    201 RMLKKNGRMGHAVILEGFPHPSGANGHRFKQFHENKQSLREQIQRFAGFL    250

BSNT_03072___    249 DFAIEKRK    256
                     ...     
RBAM_018730__    251 QQL-----    253


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