Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03051 and RBAM_018580

See DNA alignment / Visit BSNT_03051 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:55
# Commandline: needle
#    -asequence pep-align/BSNT_03051___yofA.1.9828.seq
#    -bsequence pep-align/RBAM_018580___yofA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03051___yofA-RBAM_018580___yofA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03051___yofA-RBAM_018580___yofA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03051___yofA
# 2: RBAM_018580___yofA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     155/288 (53.8%)
# Similarity:   214/288 (74.3%)
# Gaps:           3/288 ( 1.0%)
# Score: 809.0
# 
#
#=======================================

BSNT_03051___      1 MESGDLKIFQAVAREGSITKAAQMLNYVQSNVTARVHNLEEDLNIRLFHR     50
                     ||||||||||||||:|||:|||:.|:|||||||.|:..||..|..:||:|
RBAM_018580__      1 MESGDLKIFQAVARKGSISKAAESLHYVQSNVTNRIQQLERQLQTQLFYR     50

BSNT_03051___     51 TNRGMKLTAAGENLLQYADQVLSLLDQAEKSTRMSRQPKGPLRIGSLETM    100
                     |||||.||.||||||:.||::|.||.:|:|:.:.:..|.||||||||||.
RBAM_018580__     51 TNRGMTLTPAGENLLKDADRILQLLHEAQKTAQEAGDPNGPLRIGSLETA    100

BSNT_03051___    101 AVTHLPEHAASFLRRFPEVDLSVNTADTHHLIQQVLDHKVDGAFVYGPVE    150
                     |..|||:....:..|:|:|.||::|.|||.|:|.:|.:::||||||||||
RBAM_018580__    101 AAVHLPQFFTEYCSRYPKVQLSLSTGDTHTLVQHILHYELDGAFVYGPVE    150

BSNT_03051___    151 HAAVRQLHVSHDELVLISS-REGTAEDMLQQPMLFFGAGCSHRDRVKRLL    199
                     :..:.|:.|..:||||.|: |||:.:|:|::|:|:|.||||||.::|.:|
RBAM_018580__    151 YEDLEQVAVFQEELVLASNKREGSLQDLLREPILYFAAGCSHRRKIKNIL    200

BSNT_03051___    200 EEAGIHNQKIIEFGTLEAIIKGVSAGMGTALLPKSAVDCSEHRTNVWIHQ    249
                     :|..:...||||||||||||..|.||||.:.||.|||...::|.|:::|:
RBAM_018580__    201 KEEAVPAHKIIEFGTLEAIIGAVQAGMGVSFLPASAVRYFQNRKNLFLHE    250

BSNT_03051___    250 LPPAYQDLEIVFIYRKDFFITSAFQTFLDEINEMKR--    285
                     ||..::|:.|.|||:.|.|:||||:..|:.:..:..  
RBAM_018580__    251 LPEQFRDMNISFIYQSDLFLTSAFEELLNGLKALPNGR    288


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.