Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02967 and RBAM_017730

See DNA alignment / Visit BSNT_02967 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence pep-align/BSNT_02967___ccdA.1.9828.seq
#    -bsequence pep-align/RBAM_017730___ccdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02967___ccdA-RBAM_017730___ccdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02967___ccdA-RBAM_017730___ccdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02967___ccdA
# 2: RBAM_017730___ccdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 235
# Identity:     183/235 (77.9%)
# Similarity:   210/235 (89.4%)
# Gaps:           1/235 ( 0.4%)
# Score: 1002.0
# 
#
#=======================================

BSNT_02967___      1 MGDVNYFLTFGAGFLSFISPCCLPLYPAFLSYITGVSMDDVKTEKLLLQK     50
                      ...|||||||||||||||||||||||||||||||||||:|||||::|||
RBAM_017730__      1 -MSFNYFLTFGAGFLSFISPCCLPLYPAFLSYITGVSMDEVKTEKVMLQK     49

BSNT_02967___     51 RSLFHTLCFLLGFSVIFIALGYGTSFIGSLFRDYHDAIRQIGALLIILFG    100
                     |.|.|||||||||||||||||||||||||.|..||:||||.||:::||||
RBAM_017730__     50 RGLVHTLCFLLGFSVIFIALGYGTSFIGSFFTQYHEAIRQFGAIMLILFG     99

BSNT_02967___    101 FITLGVFRPEAMMKERRIHFKHKPSGFLGSVLIGMAFAAGWTPCTGPILA    150
                     .:|.|||:|:.||||||||||.:|.||:||||||:||||||:||:||||.
RBAM_017730__    100 LVTAGVFQPKFMMKERRIHFKRRPEGFIGSVLIGLAFAAGWSPCSGPILG    149

BSNT_02967___    151 AVITLAGTNPGSAVPYMMLYVLGFAVPFLLLSFFITKLKWIRKNQLFIMK    200
                     ||.:||.|||.||||||.|||||||:|||:||||||::.||||:||.|||
RBAM_017730__    150 AVFSLANTNPSSAVPYMFLYVLGFAIPFLVLSFFITRMNWIRKHQLLIMK    199

BSNT_02967___    201 AGGVLMIVIGVLLFFNWMSLIIILLSDLFGGFTGF    235
                     .||:|||:|||:|||||||.|:|:||:|||||||.
RBAM_017730__    200 IGGILMILIGVMLFFNWMSYILIVLSNLFGGFTGL    234


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