Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02782 and RBAM_017080

See DNA alignment / Visit BSNT_02782 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence pep-align/BSNT_02782___ymaC.1.9828.seq
#    -bsequence pep-align/RBAM_017080___ymaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02782___ymaC-RBAM_017080___ymaC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02782___ymaC-RBAM_017080___ymaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02782___ymaC
# 2: RBAM_017080___ymaC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 235
# Identity:     162/235 (68.9%)
# Similarity:   199/235 (84.7%)
# Gaps:           0/235 ( 0.0%)
# Score: 876.0
# 
#
#=======================================

BSNT_02782___      1 MRRFLLNVILVLAIVLFLRYVHYSLEPEPSNQPDTYSNFSSLAENESPAD     50
                     |:|.|||||:::|:||.:|..||:.:|:|||..|||::|..|||:|.|.|
RBAM_017080__      1 MKRILLNVIIIVAMVLLIRCAHYASDPDPSNSSDTYTDFKDLAEHEDPDD     50

BSNT_02782___     51 YDISYNEKKGSKVLIMSPHGGRIEGGVSELVRYFNNEYSTYLFEGLKSHD    100
                     |.||||::|||.|||||||||||||||||:||.|.::||||||||||:||
RBAM_017080__     51 YHISYNKRKGSPVLIMSPHGGRIEGGVSEIVRSFRDDYSTYLFEGLKTHD    100

BSNT_02782___    101 NQTLHITSTNFDEPLAKKKIKEHQYVVAFHGYKGENKNTLVGGTDRKRAK    150
                     |||||||||.||||.|.:.||:|.||:|.|||||:.|||||||:||||||
RBAM_017080__    101 NQTLHITSTRFDEPSAVESIKQHHYVIAVHGYKGDEKNTLVGGSDRKRAK    150

BSNT_02782___    151 MIVRALERRGFSAELASSKSGLAGLNAENINNQGETGLSIQLEISREQRE    200
                     .:||||||.|||||||::|:||||::.||||||.:|||||||||||||||
RBAM_017080__    151 KLVRALERNGFSAELATTKTGLAGVDTENINNQAQTGLSIQLEISREQRE    200

BSNT_02782___    201 AFFDDFYYKNRKYTKNSEFYAYVSAIKGVLEKEYL    235
                     ||||:|.|:.|::||..|||.:|..||.|:.:||.
RBAM_017080__    201 AFFDNFDYREREFTKTEEFYRFVRTIKRVINQEYS    235


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