Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02728 and RBAM_016660

See DNA alignment / Visit BSNT_02728 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:40
# Commandline: needle
#    -asequence pep-align/BSNT_02728___ymfC.1.9828.seq
#    -bsequence pep-align/RBAM_016660___ymfC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02728___ymfC-RBAM_016660___ymfC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02728___ymfC-RBAM_016660___ymfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02728___ymfC
# 2: RBAM_016660___ymfC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 241
# Identity:     208/241 (86.3%)
# Similarity:   225/241 (93.4%)
# Gaps:           0/241 ( 0.0%)
# Score: 1086.0
# 
#
#=======================================

BSNT_02728___      1 MSTKADNRHLYLKVIERIKEDIKNGIYTEKEKLPSEFELSKKLGVSRATL     50
                     ||||||||||||||||||||||:||||||||||||||||||.:|||||||
RBAM_016660__      1 MSTKADNRHLYLKVIERIKEDIQNGIYTEKEKLPSEFELSKSMGVSRATL     50

BSNT_02728___     51 REALRILEEEHVIIRRHGVGTFVHSKPLFLSGIEQLNSVTKMIEQANMTP    100
                     ||||||||||||||||||||||||:||||||||||||||||.|:||||.|
RBAM_016660__     51 REALRILEEEHVIIRRHGVGTFVHTKPLFLSGIEQLNSVTKTIQQANMVP    100

BSNT_02728___    101 GTIFLSSQVLMPSEDDTKRFHLAEGQELFYLERVRTADGQPIVYCIDKIP    150
                     |||||||||:.||::|..||.|...||||||||||||.|.|:|||:|.||
RBAM_016660__    101 GTIFLSSQVITPSDEDIARFRLEPEQELFYLERVRTASGTPVVYCLDTIP    150

BSNT_02728___    151 MNILPNSFSHQQESMFDLLEKNSGSVISYAVTDIEPIGYHDTISPVLECD    200
                     |:||||||.|:|||:||||||||||||||||.|||||||||||||||||:
RBAM_016660__    151 MHILPNSFCHEQESIFDLLEKNSGSVISYAVADIEPIGYHDTISPVLECE    200

BSNT_02728___    201 PETALLLLKQTHYDQHDKPVLYSLNYFRADKFRFHVLRKRF    241
                     |||||||||||||:|:|:||||||||||||||.|||:||||
RBAM_016660__    201 PETALLLLKQTHYNQNDEPVLYSLNYFRADKFSFHVVRKRF    241


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