Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02682 and RBAM_016300

See DNA alignment / Visit BSNT_02682 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence pep-align/BSNT_02682___cheD.1.9828.seq
#    -bsequence pep-align/RBAM_016300___cheD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02682___cheD-RBAM_016300___cheD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02682___cheD-RBAM_016300___cheD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02682___cheD
# 2: RBAM_016300___cheD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 166
# Identity:     146/166 (88.0%)
# Similarity:   157/166 (94.6%)
# Gaps:           0/166 ( 0.0%)
# Score: 749.0
# 
#
#=======================================

BSNT_02682___      1 MSTTEAVVIKVGIADVKIARFPDTIRTSGLGSCVGLVLYDKEKQTAGLVH     50
                     ||..||.|:|||||||::||:||.|||||||||||||||||:||||||||
RBAM_016300__      1 MSRAEAAVVKVGIADVQVARYPDKIRTSGLGSCVGLVLYDKDKQTAGLVH     50

BSNT_02682___     51 VMLPDSTLSKTAELNRAKYADTAVQTTIDMLIEAGCRKFALKAKLAGGSE    100
                     ||||||.|||||||||||||||||:.|||||::|||||||||||||||:|
RBAM_016300__     51 VMLPDSGLSKTAELNRAKYADTAVKMTIDMLLKAGCRKFALKAKLAGGAE    100

BSNT_02682___    101 MFKFKSTNDLMKIGPRNVLAIKEQLSLFNIPIISEDTGGSSGRTIEFEPK    150
                     |||||.||||||||||||.||||||||:|||:||||||||||||||||||
RBAM_016300__    101 MFKFKMTNDLMKIGPRNVAAIKEQLSLYNIPVISEDTGGSSGRTIEFEPK    150

BSNT_02682___    151 SCMLHIRTVKQGEKTI    166
                     |||||||||||||.||
RBAM_016300__    151 SCMLHIRTVKQGETTI    166


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