Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02353 and RBAM_013840

See DNA alignment / Visit BSNT_02353 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence pep-align/BSNT_02353___ykuE.1.9828.seq
#    -bsequence pep-align/RBAM_013840___ykuE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02353___ykuE-RBAM_013840___ykuE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02353___ykuE-RBAM_013840___ykuE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: RBAM_013840___ykuE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     183/287 (63.8%)
# Similarity:   209/287 (72.8%)
# Gaps:          17/287 ( 5.9%)
# Score: 995.0
# 
#
#=======================================

BSNT_02353___      1 MKKMSRRQFLKGMFGALAAGALTAGGGYGYARYLEPHMIETTEHTIKSSL     50
                                     :.|....|.||||||||:||.|||.|.|||.|.|
RBAM_013840__      1 ----------------MGAALAMACGGYGYARYIEPRMIEITRHTITSRL     34

BSNT_02353___     51 IPHGFDGFKIVQFSDAHLSDYFTLEDLKTVILTINESKPDLIVFTGDIID    100
                     ||.|||.||||||||.||||.||..||......||:.||||::||||:||
RBAM_013840__     35 IPRGFDNFKIVQFSDTHLSDVFTSGDLNKAAEKINQLKPDLLIFTGDLID     84

BSNT_02353___    101 NPDTYQHHQAVIPLLRKLNAPFGKLCIYGNHDHGGYGTAVYKSLMTAGGF    150
                     .|..:..||..:.:|:.|.|||||||:|||||||||||..||:||.|..|
RBAM_013840__     85 KPHLFNDHQHALAVLQNLEAPFGKLCVYGNHDHGGYGTNTYKALMEAADF    134

BSNT_02353___    151 TVYRNGYQTLSLADGSKIEIASLDDLMLGNPDYEGTLSRLSDRLFSILLV    200
                     .|:||||..:.|.|||:||.|.|||:|||.|||||||||||:..||||:|
RBAM_013840__    135 QVFRNGYHQVQLTDGSRIEFAFLDDVMLGKPDYEGTLSRLSEDAFSILIV    184

BSNT_02353___    201 HEPDAALKTTDYPVNLQLSGHTHGGQIQLPFYGPIITPPYGKVYTEGMYQ    250
                     |||||||||..|||||||||||||||:||||:||:|||||||.||:|||.
RBAM_013840__    185 HEPDAALKTGGYPVNLQLSGHTHGGQVQLPFFGPLITPPYGKTYTDGMYT    234

BSNT_02353___    251 TGSTHIYVNRGLGMTRLPLRFLAKPEITVFTLKSTN-    286
                     ...|.:|||||||.||||.||||:||||:||||:.. 
RBAM_013840__    235 LHDTAVYVNRGLGTTRLPYRFLARPEITLFTLKTEQK    271


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