Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02224 and RBAM_013080

See DNA alignment / Visit BSNT_02224 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence pep-align/BSNT_02224.1.9828.seq
#    -bsequence pep-align/RBAM_013080___ykoD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02224-RBAM_013080___ykoD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02224-RBAM_013080___ykoD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: RBAM_013080___ykoD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 547
# Identity:     337/547 (61.6%)
# Similarity:   421/547 (77.0%)
# Gaps:           2/547 ( 0.4%)
# Score: 1732.5
# 
#
#=======================================

BSNT_02224         1 MQAFDELLKVDELSFSYEEDEKPVFQDISFELQKGECVLLLGPSGCGKSS     50
                     |||.:.||....|:|||::||||:.|::||:|:|||..||||||||||||
RBAM_013080__      1 MQACEPLLSAGRLTFSYDQDEKPILQNVSFQLRKGERALLLGPSGCGKSS     50

BSNT_02224        51 LALCLNGLYPEACDGIQSGHVFLFQKPVTDAETSQTIAQHAGVVFQDPDQ    100
                     |||||||||||||||:|||.|.|:..|:  :..::..|:..|||||||||
RBAM_013080__     51 LALCLNGLYPEACDGVQSGTVSLYGTPL--SHLTEPAARSIGVVFQDPDQ     98

BSNT_02224       101 QFCMLTVEDEIAFGLENLQIPKEEMTEKINTVLEKLRITHLKEKTISTLS    150
                     |||||||||||||||||||..||:|...|:.|||||.|||||.:||::||
RBAM_013080__     99 QFCMLTVEDEIAFGLENLQYTKEDMDAIIDDVLEKLEITHLKTRTIASLS    148

BSNT_02224       151 GGQKQKVALACILAMEPELIILDEPTSLLDPFSAREFVHLMKDLQREKGF    200
                     ||.|||||||||:|||||||||||||:.|||.||||.|.|:||||.:|||
RBAM_013080__    149 GGSKQKVALACIIAMEPELIILDEPTAQLDPHSARELVRLIKDLQAKKGF    198

BSNT_02224       201 SLLVIEHQLDEWAPWIERTIVLDKSGKKALDGLTKNLFQHEAETLKKLGI    250
                     .|||||||||.||||::||||||::|:|.:||.|..:|:.:.|.|.:|||
RBAM_013080__    199 GLLVIEHQLDHWAPWMDRTIVLDETGQKVMDGETDVIFETKVEELIELGI    248

BSNT_02224       251 TIPKVCHLQEKLSMPFTLSKKMLFKEPIPPGHAKKKEAPSGESVLEVSSL    300
                     .||:|..||:.:|:||||.|:.||.||:|.....:..|.|.|..|.|..|
RBAM_013080__    249 PIPRVISLQKHVSIPFTLCKEKLFHEPVPSLPEPRPAALSAEDALSVHEL    298

BSNT_02224       301 SFARGQQTIFKDISFSLRGGSLTALVGPNGTGKSTLLSVLARLMKPQSGK    350
                     ||:||...||:|:|||::.||:||:.||||||||||||..|:|::|..|.
RBAM_013080__    299 SFSRGADVIFQDVSFSVKKGSITAIAGPNGTGKSTLLSAAAKLIRPLGGD    348

BSNT_02224       351 ILLYDQPLQKYKEKELRKRMGFVFQNPEHQFVTDTVYDELLFGQKANAET    400
                     |.:..:|:..|.|||||:.:|:||||||||||||:|..||:||.:::...
RBAM_013080__    349 IKIDGRPIDSYSEKELRRLIGYVFQNPEHQFVTDSVIQELMFGFESSRAA    398

BSNT_02224       401 EKKAQHLLQRFGLAHLADHHPFAISQGQKRRLSVATMLMHDVKVLLLDEP    450
                     ::||..||.||||...|..|||::||||||||||||||||:|.||:||||
RBAM_013080__    399 KEKALQLLTRFGLRRHASQHPFSLSQGQKRRLSVATMLMHNVNVLMLDEP    448

BSNT_02224       451 TFGQDARTAAECMEMIQRIKAEGTAVLMITHDMELVSSYADSVLVLHDTG    500
                     ||||||:||.|||:|::.|:.|||||||:||||||||.|||::|||..|.
RBAM_013080__    449 TFGQDAKTARECMQMLREIQKEGTAVLMVTHDMELVSDYADTILVLCGTK    498

BSNT_02224       501 LAFDGSPAQLFSQETGLVQKAKLTLPLLYKWMAYQEEVRDEAAVTSH    547
                     |.|.|:|..|||..|.:.::|.|.|||.|:||.:....|:|.|....
RBAM_013080__    499 LVFRGTPDALFSDNTRIAEQAHLALPLRYEWMRHDRRRRNELAAGGC    545


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