Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02193 and RBAM_012870

See DNA alignment / Visit BSNT_02193 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence pep-align/BSNT_02193.1.9828.seq
#    -bsequence pep-align/RBAM_012870___ykgA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02193-RBAM_012870___ykgA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02193-RBAM_012870___ykgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02193
# 2: RBAM_012870___ykgA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:      90/286 (31.5%)
# Similarity:   121/286 (42.3%)
# Gaps:         129/286 (45.1%)
# Score: 491.0
# 
#
#=======================================

BSNT_02193         0 --------------------------------------------------      0
                                                                       
RBAM_012870__      1 MDVSIPKSTRKPACRSEFDALQTVILCRPEHMAIKDIINGTQKHFKQENI     50

BSNT_02193         0 --------------------------------------------------      0
                                                                       
RBAM_012870__     51 NIPVALKQHSEFIDILRSHQIEVVLLPADPALPEQVFTRDIGFVLGETAF    100

BSNT_02193         1 -----------------------------MLDTSIEGGDVIIDDDIVYVG     21
                                                  :...:|||||::|.|..:|.|
RBAM_012870__    101 ISNMAASVRQGEEKVFQNLLDNKKIPYTRLKKANIEGGDILIADGTIYAG    150

BSNT_02193        22 ISQRTVISAIGQLEEALPEYTIVPVKLHEKFLHLDCVFNIVSESEALIYP     71
                     :|:||..:|:.:|.|||||.|:||:.|.|.|||||||||::||:|||...
RBAM_012870__    151 LSERTDKAAVRELREALPEMTVVPIPLKEDFLHLDCVFNMISETEALYCK    200

BSNT_02193        72 QAIEPDAADMLAKRYDLIEVPEDEQFTLGTNVLSIEKKTIISLPGNRHVN    121
                     ..:.....|:||:|:::|||||:||||||.|:|||..:||||||.:||.|
RBAM_012870__    201 NGLRQKEIDLLAERFEMIEVPEEEQFTLGPNILSIGNQTIISLPQHRHTN    250

BSNT_02193       122 QQLSKRGYHIIEIDLSEIIKSGGSFRCCTMPLIRGE    157
                     ::|.||||.:||.:.||||||||||||||:||:|..
RBAM_012870__    251 RELRKRGYTVIETEFSEIIKSGGSFRCCTLPLVRTS    286


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