Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02170 and RBAM_012680

See DNA alignment / Visit BSNT_02170 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence pep-align/BSNT_02170___spoIISA.1.9828.seq
#    -bsequence pep-align/RBAM_012680___spoIISA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02170___spoIISA-RBAM_012680___spoIISA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02170___spoIISA-RBAM_012680___spoIISA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02170___spoIISA
# 2: RBAM_012680___spoIISA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     198/248 (79.8%)
# Similarity:   226/248 (91.1%)
# Gaps:           0/248 ( 0.0%)
# Score: 1062.0
# 
#
#=======================================

BSNT_02170___      1 MVLFFQIMVWCIVAGLGLYVYATWRFEAKVKEKMSAIRKTWYLLFVLGAM     50
                     |:||||||||.:.|.|.|||||:||:||||||||.|||||||||||||:|
RBAM_012680__      1 MLLFFQIMVWTMAAALILYVYASWRYEAKVKEKMFAIRKTWYLLFVLGSM     50

BSNT_02170___     51 VYWTYEPTSLFTHWERYLIVAVSFALIDAFIFLSAYVKKLAGSELETDTR    100
                     |||||:|.|||..|.:||||||.|||||||||||||:|||||:|||||||
RBAM_012680__     51 VYWTYDPESLFAEWRQYLIVAVCFALIDAFIFLSAYIKKLAGNELETDTR    100

BSNT_02170___    101 EILEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTY    150
                     |||||||||||.||.:|||||||||||||||||||.:||||||.:||..|
RBAM_012680__    101 EILEENNEMLHSYLEKLKTYQYLLKNEPIHVYYGSTEAYAEGISRLLAAY    150

BSNT_02170___    151 ADKMNLTASLCHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVV    200
                     |:|||:|||||.||.|||||||||||.|.||||:||:||||||||.|::|
RBAM_012680__    151 AEKMNVTASLCDYSAQADKDRLTEHMPDAADVQSRLNRKDVYYDQKGRLV    200

BSNT_02170___    201 LIPFTIETQNYVIKLTSDSIVTEFDYLLFTSLTSIYDLVLPIEEEGEG    248
                     |||||::.::|||||||::::|||||||||||||||||:|||||||:|
RBAM_012680__    201 LIPFTVQNRHYVIKLTSENLLTEFDYLLFTSLTSIYDLMLPIEEEGDG    248


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.