Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02070 and RBAM_012290

See DNA alignment / Visit BSNT_02070 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence pep-align/BSNT_02070___yjiB.1.9828.seq
#    -bsequence pep-align/RBAM_012290___yjiB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02070___yjiB-RBAM_012290___yjiB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02070___yjiB-RBAM_012290___yjiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02070___yjiB
# 2: RBAM_012290___yjiB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     254/405 (62.7%)
# Similarity:   313/405 (77.3%)
# Gaps:           9/405 ( 2.2%)
# Score: 1369.0
# 
#
#=======================================

BSNT_02070___      1 -MNVLNRRQALQRALLNGKNKQDAYHPFPWYESMRKDAPVSFDEENQVWS     49
                      ..:.:.|||:||.|:.|||..|.|:||||||.||:::|:.||||.:|||
RBAM_012290__      1 MSKLRSTRQAIQRTLMKGKNGLDVYNPFPWYEKMRRESPIHFDEETKVWS     50

BSNT_02070___     50 VFLYDDVKKVVGDKELFSSCMPQQTSSIGNSIINMDPPKHTKIRSVVNKA     99
                     ||||||||||:.|||.|||.|....|||..|::||||||||:|||.||:|
RBAM_012290__     51 VFLYDDVKKVISDKETFSSLMTDVKSSIAKSMLNMDPPKHTQIRSAVNRA    100

BSNT_02070___    100 FTPRVMKQWEPRIQEITDELIQKCQGRSEFDLVHDFSYPLPVIVISELLG    149
                     |||||:|:|||||::|||.|:::.:.:...|:|.|.||||||:|||||||
RBAM_012290__    101 FTPRVLKEWEPRIKDITDHLLKQAKNKGRIDIVKDLSYPLPVMVISELLG    150

BSNT_02070___    150 VPSAHMEQFKAWSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGII    199
                     |||..|:|||.|||:|||.|||.|.||.:...:|||:||.|||||||.||
RBAM_012290__    151 VPSERMDQFKKWSDILVSMPKDASPEAAEKNQQERDQCEAELAAFFAEII    200

BSNT_02070___    200 EEKRNKPEQDIISILVEAEETGEKLSGEELIPFCTLLLVAGNETTTNLIS    249
                     |.||.:|.|||||||::.||.||||:.|:|||||.|||||||||||||||
RBAM_012290__    201 ESKRKQPGQDIISILIKEEEEGEKLTAEDLIPFCNLLLVAGNETTTNLIS    250

BSNT_02070___    250 NAMYSILETPGVYEELRSHPELMPQAVEEALRFRAPAPVLRRIAKRDTEI    299
                     ||:||||||||:|||||..|.|:.|.|||.||||||||.:||..:.|||:
RBAM_012290__    251 NAVYSILETPGLYEELRQDPSLIAQTVEETLRFRAPAPFVRRTVRHDTEL    300

BSNT_02070___    300 GGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRRHPNPHIAFGHGIHFC    349
                     .|..:|.|::||.:||||||||.||::..:|||.|..|||::||.|:|||
RBAM_012290__    301 RGRRLKSGEIVLCYVASANRDENKFEKAGVFDIHRQSNPHLSFGFGVHFC    350

BSNT_02070___    350 LGAPLARLEANIALTSLISAFPHMECVSITPIENSVIYGLKSFRVKI---    396
                     ||||||||||.:||..::.||.|:|.|.|.||.|||:|||:|...:|   
RBAM_012290__    351 LGAPLARLEAEVALKGIVKAFSHLEPVRIEPIRNSVMYGLESLEAEINEN    400

BSNT_02070___    396 -----    396
                          
RBAM_012290__    401 EGEEK    405


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.