Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01982 and RBAM_011940

See DNA alignment / Visit BSNT_01982 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence pep-align/BSNT_01982___yjcJ.1.9828.seq
#    -bsequence pep-align/RBAM_011940___yjcJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01982___yjcJ-RBAM_011940___yjcJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01982___yjcJ-RBAM_011940___yjcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01982___yjcJ
# 2: RBAM_011940___yjcJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 391
# Identity:     348/391 (89.0%)
# Similarity:   368/391 (94.1%)
# Gaps:           1/391 ( 0.3%)
# Score: 1796.0
# 
#
#=======================================

BSNT_01982___      1 MSKHNWTLETQLVHNPFKTDGGTGAVSVPIQHASTFHQSSFEEFGAYDYS     50
                     ||.||||||||||||||||||.|||||||||||||||||||||||.||||
RBAM_011940__      1 MSNHNWTLETQLVHNPFKTDGATGAVSVPIQHASTFHQSSFEEFGTYDYS     50

BSNT_01982___     51 RSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTE    100
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_011940__     51 RSGTPTRTALEETIAGLEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTE    100

BSNT_01982___    101 DVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVIYMETPSN    150
                     ||||||||||||||:|||||||||||||...|||:|:||||.||||||||
RBAM_011940__    101 DVYGGTFRMVTEVLSRFGIEHTFVDMTDTEAVARAIRPNTKAIYMETPSN    150

BSNT_01982___    151 PTLGITDIKAIVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATK    200
                     |||||||||.:|:|||::||||:|||||||||||||||||||||||||||
RBAM_011940__    151 PTLGITDIKGVVKLAKDHGCLTYLDNTFMTPALQRPLDLGVDIVLHSATK    200

BSNT_01982___    201 FLSGHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTL    250
                     |||||||||||||||||||||.|||||||:||||||||||||||||||||
RBAM_011940__    201 FLSGHSDVLSGLAAVKDEELGNQLYKLQNSFGAVLGVQDCWLVLRGLKTL    250

BSNT_01982___    251 QVRLEKASQTAQRLAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGA    300
                     ||||||||:||:||:.:|..|||:|.|||||||.||||:|||.|::||||
RBAM_011940__    251 QVRLEKASRTAERLSAYFDGHPAIKNVYYPGLAGHPGADTHKRQASGAGA    300

BSNT_01982___    301 VLSFELESKEAVKKLVENVSLPVFAVSLGAVESILSYPATMSHAAMPKEE    350
                     |||||||||||||||||||||||||||||||||||||||.||||||||.|
RBAM_011940__    301 VLSFELESKEAVKKLVENVSLPVFAVSLGAVESILSYPAAMSHAAMPKAE    350

BSNT_01982___    351 REKRGITDGLLRLSVGVEHADDLEHDFEQALKEIAPVAVR-    390
                     ||||||||||||||||||:|:|||.|||||||:|.|..|| 
RBAM_011940__    351 REKRGITDGLLRLSVGVENAEDLERDFEQALKKITPAQVRS    391


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