Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00961 and RBAM_010780

See DNA alignment / Visit BSNT_00961 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence pep-align/BSNT_00961___ydfS.1.9828.seq
#    -bsequence pep-align/RBAM_010780___ydfS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00961___ydfS-RBAM_010780___ydfS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00961___ydfS-RBAM_010780___ydfS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00961___ydfS
# 2: RBAM_010780___ydfS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 237
# Identity:     130/237 (54.9%)
# Similarity:   175/237 (73.8%)
# Gaps:           2/237 ( 0.8%)
# Score: 668.0
# 
#
#=======================================

BSNT_00961___      1 -MIEL-EVVIRTVASFGLLLIAERILGKQTISQMTIFDFIAAITLGAIAA     48
                      |.|. ||::||..||.:|.|..||||||||||||:|||||||:||||.|
RBAM_010780__      1 MMSEYPEVIVRTALSFSILFIGARILGKQTISQMTLFDFIAAISLGAITA     50

BSNT_00961___     49 GLAYNTSIKPHNMAISFSIFVLTIFLISFLSIKNRKLRKFFAGDPTVLIQ     98
                     .|::||.:..|...|::.|||..|:|:::||:|||.||.||||.||::||
RBAM_010780__     51 NLSFNTKLPIHYHVIAYIIFVAIIYLVAYLSMKNRVLRGFFAGKPTIIIQ    100

BSNT_00961___     99 NGKILESNMRKMRYTLDYLNQQLREKEIFNIEEVLFAILETNGQLTVLRK    148
                     ||||||.||:.||||:||||||||..::|:|.:|..||:||||.::|..|
RBAM_010780__    101 NGKILEHNMKTMRYTIDYLNQQLRVNDVFDISQVQTAIIETNGSMSVEVK    150

BSNT_00961___    149 PQFRHVTKQDLMIAVNQEHRLPIELIMDGEIIENNLKQNRLTESWLLEEL    198
                     |:|..||::||.|....|....:||||||.::..||::|.::|.||.|||
RBAM_010780__    151 PEFAPVTRKDLGIFAGHEKNFAVELIMDGRLVMKNLEENHVSEKWLREEL    200

BSNT_00961___    199 RKRDIKVKETVYAVLLGNGDIYVDQYKDHISVPMDKE    235
                     ..|::|.::.||||...||.::||.|.|||:.|:|:|
RBAM_010780__    201 DTRNLKPEDVVYAVRGSNGRLFVDTYDDHITSPLDQE    237


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