Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01687 and RBAM_010120

See DNA alignment / Visit BSNT_01687 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence pep-align/BSNT_01687___yhaR.1.9828.seq
#    -bsequence pep-align/RBAM_010120___yhaR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01687___yhaR-RBAM_010120___yhaR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01687___yhaR-RBAM_010120___yhaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01687___yhaR
# 2: RBAM_010120___yhaR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 271
# Identity:     174/271 (64.2%)
# Similarity:   210/271 (77.5%)
# Gaps:          16/271 ( 5.9%)
# Score: 887.0
# 
#
#=======================================

BSNT_01687___      1 MYRRKKKESVYLEVLHMEFVQYACNGAVAEIILNRPDAHHALNEQLLSEL     50
                                     |::::|...|.:|||:|||||:::|||||:|.||
RBAM_010120__      1 ----------------MQYIRYEEKGKIAEIVLNRPDSYNALNEQMLREL     34

BSNT_01687___     51 KEAVEMAAASEALIVLLRGSGKGFSAGGDIRMMTSEHDPDQFKRLMDTIE    100
                     :.|..|||.||||||||||.|:||||||||:||||:||..:::|||..||
RBAM_010120__     35 ENACVMAADSEALIVLLRGEGRGFSAGGDIQMMTSDHDSGEYERLMKMIE     84

BSNT_01687___    101 AVTLNLYQMKKVTIAAIHGAAAGLGLSLALCADIVLAEKNAVLAMNFIGI    150
                     ::||.||.|||:.||||||||||||||.|||||:||||:||.||||||||
RBAM_010120__     85 SITLTLYDMKKIVIAAIHGAAAGLGLSFALCADVVLAEENARLAMNFIGI    134

BSNT_01687___    151 GLVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTFAGDP    200
                     ||||||||||||.:|:||.:||||||||:||.|.:|..:.|.|..|:|.|
RBAM_010120__    135 GLVPDGGGHYLLMRRVGEIEAKKLIWSGEKLPAEKAVRLKLADELFSGGP    184

BSNT_01687___    201 AEGARPIIETLLASPLLAMIETKAIFQSLQIEELKKVLSLERSAQERMRR    250
                     ||||:|.|:.||.:||.||||||||:|||.|..||.||||||.|||.||:
RBAM_010120__    185 AEGAQPYIDRLLHAPLSAMIETKAIYQSLHISRLKDVLSLERKAQENMRK    234

BSNT_01687___    251 TKDHQEGIRAFLEKREPKFQA    271
                     |.||:|||.||||||.|:|..
RBAM_010120__    235 TDDHKEGICAFLEKRTPQFNR    255


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