Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01352 and RBAM_008350

See DNA alignment / Visit BSNT_01352 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence pep-align/BSNT_01352___sspH.1.9828.seq
#    -bsequence pep-align/RBAM_008350___sspH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01352___sspH-RBAM_008350___sspH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01352___sspH-RBAM_008350___sspH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01352___sspH
# 2: RBAM_008350___sspH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 60
# Identity:      37/60 (61.7%)
# Similarity:    42/60 (70.0%)
# Gaps:           1/60 ( 1.7%)
# Score: 174.0
# 
#
#=======================================

BSNT_01352___      1 MNIQRAKEIVESPDMKKVTYNGVPIYIQHVNEETGTARINPLDEPQEEHE     50
                     ||.||||:|.||..|..|||.|||||||||||:..||||.|:..||.|.|
RBAM_008350__      1 MNTQRAKDISESAAMAYVTYEGVPIYIQHVNEDKETARIFPIGNPQFEQE     50

BSNT_01352___     51 VQLNSLKED-     59
                     |.|:.|:|. 
RBAM_008350__     51 VLLSDLQEHF     60


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