Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01082 and RBAM_006700

See DNA alignment / Visit BSNT_01082 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence pep-align/BSNT_01082___cotA.1.9828.seq
#    -bsequence pep-align/RBAM_006700___cotA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01082___cotA-RBAM_006700___cotA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01082___cotA-RBAM_006700___cotA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01082___cotA
# 2: RBAM_006700___cotA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 513
# Identity:     394/513 (76.8%)
# Similarity:   454/513 (88.5%)
# Gaps:           1/513 ( 0.2%)
# Score: 2258.0
# 
#
#=======================================

BSNT_01082___      1 MTLEKFVDALPIPDTLKPVQQSKEKTYYEVTMEECTHQLHRDLPPTRLWG     50
                     |.||||.|.|||.:||:|.::|...|||||||:||.|:||||||||||||
RBAM_006700__      1 MALEKFADELPIIETLQPQKKSDGSTYYEVTMKECFHKLHRDLPPTRLWG     50

BSNT_01082___     51 YNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEV    100
                     ||||||||||:|.::||||:||||:||..||||:|||||||:|.|:||:|
RBAM_006700__     51 YNGLFPGPTIDVNKDENVYIKWMNDLPDKHFLPVDHTIHHSESGHQEPDV    100

BSNT_01082___    101 KTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAIL    150
                     |||||||||.||.||||||||||:|||::|||||:||||||||:||||:|
RBAM_006700__    101 KTVVHLHGGATPPDSDGYPEAWFTKDFKETGPYFEREVYHYPNKQRGALL    150

BSNT_01082___    151 WYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTI    200
                     ||||||||:|||||||||.|.|||.:.|||:|||||.||||||:|.|||:
RBAM_006700__    151 WYHDHAMAITRLNVYAGLAGMYIIRERKEKQLKLPSGEYDVPLMILDRTL    200

BSNT_01082___    201 NEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRKY    250
                     |:||||.|||.|.|||.:||:|||||.|||.|||||||.|||:|||||.|
RBAM_006700__    201 NDDGSLSYPSGPANPSETLPDPSIVPFFCGNTILVNGKAWPYMEVEPRTY    250

BSNT_01082___    251 RFRVINASNTRTYNLSLDNGGEFIQIGSDGGLLPRSVKLNSFSLAPAERY    300
                     |||::|||||||::|||:|||:||||||||||||||||..|.||||||||
RBAM_006700__    251 RFRILNASNTRTFSLSLNNGGKFIQIGSDGGLLPRSVKTQSISLAPAERY    300

BSNT_01082___    301 DIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESR    350
                     |::|||:|::||.|||.|..|||||.:|:||||:|||||||||...|.||
RBAM_006700__    301 DVLIDFSAFDGEHIILTNGTGCGGDADPDTDANVMQFRVTKPLKGADTSR    350

BSNT_01082___    351 KPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTEA    400
                     |||||::.|:|..:||.|||.|||..|||:||||||.|||||||||||||
RBAM_006700__    351 KPKYLSTMPNVTSKRIHNIRMLKLTNTQDKYGRPVLTLNNKRWHDPVTEA    400

BSNT_01082___    401 PKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYT    450
                     ||:|||||||||||..||||||||||||::|||||||:.||.:.|::.||
RBAM_006700__    401 PKLGTTEIWSIINPMGGTHPIHLHLVSFQILDRRPFDLERYNKFGDIVYT    450

BSNT_01082___    451 GPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDY    500
                     ||||||||||||||||:|||:|||:||||||.||||||||||||||||||
RBAM_006700__    451 GPAVPPPPSEKGWKDTVQAHSGEVIRIAATFAPYSGRYVWHCHILEHEDY    500

BSNT_01082___    501 DMMRPMDITDPHK    513
                     |||||||:||.. 
RBAM_006700__    501 DMMRPMDVTDKQ-    512


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.