Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01014 and RBAM_006240

See DNA alignment / Visit BSNT_01014 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence pep-align/BSNT_01014.1.9828.seq
#    -bsequence pep-align/RBAM_006240___ydhU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01014-RBAM_006240___ydhU.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01014-RBAM_006240___ydhU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01014
# 2: RBAM_006240___ydhU
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 284
# Identity:     211/284 (74.3%)
# Similarity:   226/284 (79.6%)
# Gaps:          38/284 (13.4%)
# Score: 1147.0
# 
#
#=======================================

BSNT_01014         1 --------------------------------------MMQFFFQSSNFR     12
                                                           |||:||||||||
RBAM_006240__      1 MYYYKEELINIIKPDKPDPAAAKVLQEILGGHYGEMRTMMQYFFQSSNFR     50

BSNT_01014        13 GKQKQYRDLLRGIFLEEIAHVELVQNTINALLDESGGEGVGSQGTDQAPL     62
                     ||:||:||||||:||||||||||||:||||||||||.||.|:|..|||||
RBAM_006240__     51 GKEKQFRDLLRGVFLEEIAHVELVQHTINALLDESGAEGPGNQAADQAPL    100

BSNT_01014        63 DEAVKHANPHHYIIGAQSSLPVDAGGNPWNGSWVYNHGNLITDLLDNLLL    112
                     |||||||||||:|||||||||||||||||||||||||||||:|||||::|
RBAM_006240__    101 DEAVKHANPHHFIIGAQSSLPVDAGGNPWNGSWVYNHGNLISDLLDNVVL    150

BSNT_01014       113 ESTGVLQKTRIYEMSSNQTFRETLAFLIVRDNAHQNAFAKALETLGVEWA    162
                     ||||||||||||||||||||||||.|||||||||||||.||||||||||.
RBAM_006240__    151 ESTGVLQKTRIYEMSSNQTFRETLGFLIVRDNAHQNAFTKALETLGVEWG    200

BSNT_01014       163 KLLPVPNYDINKYPECRKYVELGYHNAQFNFRLDETRIDEIYQGKSPSRN    212
                     ||.|||||||.|||||||:||:||||.|||||||.|||.||.||.:||||
RBAM_006240__    201 KLFPVPNYDIEKYPECRKFVEMGYHNTQFNFRLDPTRIGEILQGTTPSRN    250

BSNT_01014       213 GGELQVIDPPAGFPVPVLPEIPNEHSPGLGDMNA    246
                     ||||.|.:||.|||||.|||:||||||||.|||.
RBAM_006240__    251 GGELSVSEPPKGFPVPELPELPNEHSPGLKDMNL    284


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