Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_06060 and RBAM_003920

See DNA alignment / Visit BSNT_06060 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:33
# Commandline: needle
#    -asequence pep-align/BSNT_06060___yxeM.1.9828.seq
#    -bsequence pep-align/RBAM_003920___yxeM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06060___yxeM-RBAM_003920___yxeM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06060___yxeM-RBAM_003920___yxeM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06060___yxeM
# 2: RBAM_003920___yxeM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     233/264 (88.3%)
# Similarity:   249/264 (94.3%)
# Gaps:           1/264 ( 0.4%)
# Score: 1194.0
# 
#
#=======================================

BSNT_06060___      1 MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKE     50
                     ||.|.|.:|:.||||||||||||| ..|:..|||||||||||||||||||
RBAM_003920__      1 MKKKTWALLLSAALLAVLSACGNG-KESEGGDNVLHVGATGQSYPFAYKE     49

BSNT_06060___     51 NGKLTGFDVEVMEAVAKKIDMKLDWKLLEFSGLMGELQTGKLDTISNQVA    100
                     |||||||||:|||||||||:||||||||||||||||||||||||||||||
RBAM_003920__     50 NGKLTGFDVDVMEAVAKKINMKLDWKLLEFSGLMGELQTGKLDTISNQVA     99

BSNT_06060___    101 VTDERKETYNFTKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSNH    150
                     ||||||:|||||:||:|||||||||.||.|||||:|||||||||||||||
RBAM_003920__    100 VTDERKKTYNFTEPYSYAGTQIVVKNDNKDIKSVNDLKGKTVAAVLGSNH    149

BSNT_06060___    151 AKNLESKDPDKKINIKTYETQEGTLKDVAYGRVDAYVNSRTVLIAQIKKT    200
                     ||||||||||||||:|||||||||||||||||||||||||:|||||||||
RBAM_003920__    150 AKNLESKDPDKKINMKTYETQEGTLKDVAYGRVDAYVNSRSVLIAQIKKT    199

BSNT_06060___    201 GLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDELRKDGTLKKLS    250
                     ||||||||||||||:||||||||.||||:|||||||:::|||||||||||
RBAM_003920__    200 GLPLKLAGDPIVYEKVAFPFAKDAAHDKIRKKVNKAIEDLRKDGTLKKLS    249

BSNT_06060___    251 EKYFNEDITVEQKH    264
                     ||||.||||.|.||
RBAM_003920__    250 EKYFKEDITTEAKH    263


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