Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00583 and RBAM_003530

See DNA alignment / Visit BSNT_00583 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence pep-align/BSNT_00583___nasB.1.9828.seq
#    -bsequence pep-align/RBAM_003530___nasB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00583___nasB-RBAM_003530___nasB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00583___nasB-RBAM_003530___nasB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00583___nasB
# 2: RBAM_003530___nasB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     536/776 (69.1%)
# Similarity:   653/776 (84.1%)
# Gaps:           6/776 ( 0.8%)
# Score: 2871.0
# 
#
#=======================================

BSNT_00583___      1 MKKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYNRILLSS     50
                     ||||||:.||||||||||||.:||:||.||||||||||||||||||||||
RBAM_003530__      1 MKKQRLIAAGNGMAGIRCIEHILKMNRDMFEIVIFGSEPHPNYNRILLSS     50

BSNT_00583___     51 VLQGEASLDDITLNSKDWYDKHGITLYTGETVIQIDTDQQQVITDRKRTL    100
                     |||||.|||||||||::||:|:||||||||||:.|||::|.|.|||||::
RBAM_003530__     51 VLQGEVSLDDITLNSREWYEKNGITLYTGETVVDIDTERQVVTTDRKRSM    100

BSNT_00583___    101 SYDKLIVATGSSPHILPIPGADKKGVYGFRTIEDCQALMNMAQHFQKAAV    150
                     :||::|:||||||:|||||||||:||||||||||||:|:|.|..:|||||
RBAM_003530__    101 TYDQIILATGSSPYILPIPGADKEGVYGFRTIEDCQSLINAASRYQKAAV    150

BSNT_00583___    151 IGAGLLGLEAAVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQK    200
                     ||||||||||||||:.|||||||||||:.||||||||||:||||.|||:|
RBAM_003530__    151 IGAGLLGLEAAVGLRQLGMDVSVIHHSSAIMQKQLDQTASRLLQKELERK    200

BSNT_00583___    201 GLTFLLEKDTVSISGATKADRIHFKDGSSLKADLIVMAAGVKPNIELAVS    250
                     ||.|||||.|.||:|.::|:.|.|||.||::||||||||||:|||.||.|
RBAM_003530__    201 GLVFLLEKGTASITGNSRAEGIRFKDSSSIEADLIVMAAGVRPNIRLAPS    250

BSNT_00583___    251 AGIKVNRGIIVNDFMQTSEPNIYAVGECAEHNGTVYGLVAPLYEQGKALA    300
                     ||:.||||||||.||||::||:|||||||||:|.||||..|||||||.||
RBAM_003530__    251 AGLSVNRGIIVNQFMQTNKPNVYAVGECAEHDGIVYGLAPPLYEQGKVLA    300

BSNT_00583___    301 SHICGVPCEEYQGSAPSAALKIAGIDVWSAGKIQEDERTTSIKIYDEQAG    350
                     .|:||||||.:||.|.||||||||||||||||:.|||.|..|..:||.||
RBAM_003530__    301 QHLCGVPCEGFQGFAQSAALKIAGIDVWSAGKVHEDEHTAGILFHDEHAG    350

BSNT_00583___    351 VYKKALFVDEKLAGVILFGDTRDKQRLLDSLLKQRDISIVKKQIIEPETS    400
                     :||||||.|:|.||.|||||||.||||||||:|||||||||||::||:..
RBAM_003530__    351 IYKKALFEDDKPAGFILFGDTRGKQRLLDSLVKQRDISIVKKQLMEPDQG    400

BSNT_00583___    401 GPLFESMPSSETICQCNTVTKGAIEEAVHTNSLTTVEEVKHCTKATGSCG    450
                     |..|||||..||||||::||||:|||||:...|.|.|||||.|||:||||
RBAM_003530__    401 GISFESMPPHETICQCSSVTKGSIEEAVNKYGLKTAEEVKHMTKASGSCG    450

BSNT_00583___    451 GCKPLVEDLLRHMTNSEYTKPAGTPSFCSCTDFTEDDIIAELQRRPFTNP    500
                     ||:|||||||::|.:.:||||:..||||.|||.||:::|||:.|||||:.
RBAM_003530__    451 GCRPLVEDLLKYMASDDYTKPSRQPSFCGCTDLTEEEVIAEICRRPFTDA    500

BSNT_00583___    501 AEVMNQLDWKTKNGCSTCVPAIQYYLEMLYPGFVQ-PEPATEETCILIPQ    549
                     ||||.::.|||:|||..|:||:.||||...|.|:| .|.:.||||.||||
RBAM_003530__    501 AEVMREIGWKTENGCRICIPALHYYLERTRPDFMQFNEISAEETCTLIPQ    550

BSNT_00583___    550 MYGGRTNAEQLRTIANIIEAYSIPDVSITHGQRLKLSGIKPADLPNIKKD    599
                     ||||.|:|.:|:.||::||||.||.||:|...||:||||:|.||.:|:|.
RBAM_003530__    551 MYGGLTSAAELKNIADVIEAYGIPGVSMTDSHRLRLSGIRPNDLASIRKA    600

BSNT_00583___    600 LKMPVYTNEHRHALQSIKACTCGQNRSIQQLAAQIERQLEMLPLPAPISI    649
                     |.|||::..||..:| |:||||||:||.|:||::|||..:.|.:.|.:|:
RBAM_003530__    601 LNMPVFSPRHRWTIQ-IRACTCGQHRSFQELASRIERDTDTLAVSAYVSV    649

BSNT_00583___    650 SLSCETDCTDAALQDVGAIRRQAGWDIHIGGVRGTHARSGALFCVTENED    699
                     |||||.:||||.:||:|||:.|.||:|:|||.||..||:|:|||||:|||
RBAM_003530__    650 SLSCENNCTDAYIQDIGAIQTQTGWEIYIGGFRGKQARAGSLFCVTDNED    699

BSNT_00583___    700 STAGMIKGLIQYYRETAHYLEGVHQWIDRLGIVHIREVLFEEDLRAQLLE    749
                     |||.|:|||||||||||||.|.::||:||||:|||||:|||||:|.|||:
RBAM_003530__    700 STAAMMKGLIQYYRETAHYNEAIYQWVDRLGLVHIREMLFEEDMRTQLLK    749

BSNT_00583___    750 SLQTDLSLIQNPTVETGAYKKG----    771
                     :|::|:||:||.:.....|::.    
RBAM_003530__    750 NLRSDISLLQNLSAGKTPYERMKLFD    775


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_00583 and RBAM_003530

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
