Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00568 and RBAM_003440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence pep-align/BSNT_00568___ycgM.1.9828.seq
# -bsequence pep-align/RBAM_003440___ycgM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: RBAM_003440___ycgM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity: 268/325 (82.5%)
# Similarity: 289/325 (88.9%)
# Gaps: 22/325 ( 6.8%)
# Score: 1416.0
#
#
#=======================================
BSNT_00568___ 1 ----------------------MITRDFFLFLSKSGFLNKMARNWGSRVA 28
:||||||||||||.|||||||:||||||
RBAM_003440__ 1 MFCPFTIDSYKYFLDCGVLRLEVITRDFFLFLSKSSFLNKMARSWGSRVA 50
BSNT_00568___ 29 AGKIIGGNDFNSSIPTIRQLNSQGLSVTVDHLGEFVNSAEVARERTEECI 78
|||||||.||.|||||||.|||||||||||||||||||.:||:||||||:
RBAM_003440__ 51 AGKIIGGMDFRSSIPTIRHLNSQGLSVTVDHLGEFVNSGDVAKERTEECM 100
BSNT_00568___ 79 QTIATIADQELNSHVSLKMTSLGLDIDMDLVYENMTKILQTAEKHKIMVT 128
||||.|||::|||.|||||||||||||:||||||||||||||||||:|||
RBAM_003440__ 101 QTIALIADEQLNSQVSLKMTSLGLDIDLDLVYENMTKILQTAEKHKVMVT 150
BSNT_00568___ 129 IDMEDEVRCQKTLDIFKDFRKKYEHVSTVLQAYLYRTEKDIDDLDSLNPF 178
||||||.|||||||||||||.:||:||||:||||||||||:|||..||||
RBAM_003440__ 151 IDMEDETRCQKTLDIFKDFRSRYEYVSTVVQAYLYRTEKDLDDLSPLNPF 200
BSNT_00568___ 179 LRLVKGAYKESEKVAFPEKSDVDENYKKIIRKQLLNGHYTAIATHDDKMI 228
|||||||||||||||:|||||||||||::||||||.|||||:||||||||
RBAM_003440__ 201 LRLVKGAYKESEKVAYPEKSDVDENYKRLIRKQLLKGHYTAVATHDDKMI 250
BSNT_00568___ 229 DFTKQLAKEHGIANDKFEFQMLYGMRSQTQLSLVKEGYNMRVYLPYGEDW 278
:|||||||||||.||:||||||||||||||||||:|||.||||||||:||
RBAM_003440__ 251 EFTKQLAKEHGIPNDRFEFQMLYGMRSQTQLSLVEEGYRMRVYLPYGDDW 300
BSNT_00568___ 279 YGYFMRRLAERPSNIAFAFKGMTKK 303
|||||||||||||||||||||||||
RBAM_003440__ 301 YGYFMRRLAERPSNIAFAFKGMTKK 325
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