Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00498 and RBAM_003070

See DNA alignment / Visit BSNT_00498 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence pep-align/BSNT_00498.1.9828.seq
#    -bsequence pep-align/RBAM_003070___ycdD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00498-RBAM_003070___ycdD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00498-RBAM_003070___ycdD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00498
# 2: RBAM_003070___ycdD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 167
# Identity:     103/167 (61.7%)
# Similarity:   117/167 (70.1%)
# Gaps:          36/167 (21.6%)
# Score: 578.0
# 
#
#=======================================

BSNT_00498         1 ------------------------------------MPVPSDLHPIVKQN     14
                                                         ..:||.|||:||||
RBAM_003070__      1 MKRPVRIALLLILFFSADLCFSYVQKELRPQTALQDRAIPSALHPLVKQN     50

BSNT_00498        15 ADALKAAAANKGITVVITEGFRSFKEQDELYKQGRTKKGNIVTYARGGES     64
                     |:.|:.||..|||||||||||||.:||:|||:|||:|||||||||:||||
RBAM_003070__     51 AELLQTAALKKGITVVITEGFRSIEEQNELYRQGRSKKGNIVTYAKGGES    100

BSNT_00498        65 YHNYGLAIDFALQKKDGSIIWDMEYDGNQNGKSDWLEVVEIAKTLGFEWG    114
                     ||||||||||||||||||:||||.||||:||..||||||.|||||||:||
RBAM_003070__    101 YHNYGLAIDFALQKKDGSLIWDMTYDGNRNGTPDWLEVVSIAKTLGFDWG    150

BSNT_00498       115 GDWKRFKDYPHLEMIPN    131
                     |||:.|||||||:|||.
RBAM_003070__    151 GDWRGFKDYPHLQMIPG    167


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