Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05940 and BPUM_3535
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence pep-align/BSNT_05940___yxkH.1.24716.seq
# -bsequence pep-align/BPUM_3535___yxkH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05940___yxkH
# 2: BPUM_3535___yxkH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity: 159/288 (55.2%)
# Similarity: 208/288 (72.2%)
# Gaps: 11/288 ( 3.8%)
# Score: 814.0
#
#
#=======================================
BSNT_05940___ 1 MKR--LFLSIFLLGSCLALAAC--ADQEANAEQPMPKAE----QKKPEKK 42
||: :.:::.|| .|.::.| ..::....|.:.|.| |.|..::
BPUM_3535___y 1 MKKTCMLMTVGLL--ALLISGCMGTKEQTEGNQQVVKEEKGPLQLKETEE 48
BSNT_05940___ 43 AVQVQKKEDDTSAWIKTEKPAKLPILMYHSISSGNSLRVPKKEFEAHMKW 92
..|.:..|.||..||:.::|.:|||||||||||||||||||.||.|||||
BPUM_3535___y 49 IQQSEAIEVDTQNWIEQKEPVELPILMYHSISSGNSLRVPKSEFAAHMKW 98
BSNT_05940___ 93 LHDNGYQTLTPKEAYLMLTQDKKPSEKCVLITFDDGYTDNYQDAYPVLKK 142
|.||.|.||:|:|||.:.|.:.|||||||||||||||||||..|:|:||:
BPUM_3535___y 99 LKDNDYVTLSPEEAYRIFTTNTKPSEKCVLITFDDGYTDNYTKAFPILKQ 148
BSNT_05940___ 143 YGMKATIFMIGKSIGHRHHLTEDQMKEMAQHGISIESHTIDHVELNGLTP 192
||||||||||.:|||..:|||::||.||..:|:||||||..|:|||.|:.
BPUM_3535___y 149 YGMKATIFMIEQSIGRPNHLTDEQMDEMIANGLSIESHTSHHLELNRLSK 198
BSNT_05940___ 193 QQQQSEMADSKKLFDHMFHQQTTIISYPVGRYNEETLKAAEKTGYQMGVT 242
:||:.|:..||..||..|.|:|.::|||||||||:|||.|::.||||.||
BPUM_3535___y 199 EQQKEELKGSKAFFDQRFSQRTRMVSYPVGRYNEDTLKLAKEAGYQMAVT 248
BSNT_05940___ 243 TEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK- 279
||||.|.::|||.:|||||||||:|..:||..::..:
BPUM_3535___y 249 TEPGHAKKEQGMMSLHRVRVSPGLSPESFGRLVKGNER 286
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