Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05801 and BPUM_3436

See DNA alignment / Visit BSNT_05801 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence pep-align/BSNT_05801___spsA.1.24716.seq
#    -bsequence pep-align/BPUM_3436___spsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05801___spsA-BPUM_3436___spsA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05801___spsA-BPUM_3436___spsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05801___spsA
# 2: BPUM_3436___spsA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 260
# Identity:     166/260 (63.8%)
# Similarity:   198/260 (76.2%)
# Gaps:           5/260 ( 1.9%)
# Score: 878.0
# 
#
#=======================================

BSNT_05801___      1 ---MPKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLN     47
                        :.||:||||||||:.||.:||.:||.||.||||||||||.|||:||.
BPUM_3436___s      1 MKTLTKVTVIMTSYNKAAYVGRSIEAILQQTLSDFELFIMDDGSNEKTLA     50

BSNT_05801___     48 VIRPFLNDNRVRFYQSDVSGVKERTEKTRYAALINQAIEMAEGEYITYAT     97
                     ||.||..|.||.|.||.|..::|||.|||||.|||||:|:|:||||:|||
BPUM_3436___s     51 VIEPFRKDPRVHFIQSGVKSLEERTAKTRYAVLINQALELAKGEYISYAT    100

BSNT_05801___     98 DDNIYMPDRLLKMVQELDTHSEKAVIYSASKTYHLNENRDIVKETVRPAA    147
                     |||:|.||||.|:...||....:.::|||||..:||..::.||||:|||.
BPUM_3436___s    101 DDNVYAPDRLEKLTHYLDARPGEDIVYSASKVIYLNSKKEPVKETIRPAQ    150

BSNT_05801___    148 QVTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWR    197
                     .|.||||||||||||:||.|:|.|:..:|||||||||.||||||||||:|
BPUM_3436___s    151 TVQWNAPCAIDHCSVVHRASILTKIHAEFGSYWDESPHFYRIGDARFFFR    200

BSNT_05801___    198 VNHFYPFYPLDEELDLNYITDQSIHFQLFESEKNEFVRNLPPQRNCRELR    247
                     :||||||||.||.||.||||:||||:||.|.||:.|::.||.|..|.|||
BPUM_3436___s    201 LNHFYPFYPYDEVLDTNYITEQSIHYQLAEEEKSAFIQALPEQSTCWELR    250

BSNT_05801___    248 ESLK-KLGMG    256
                     ..|| |.|. 
BPUM_3436___s    251 HILKQKHGR-    259


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.