Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05677 and BPUM_3361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence pep-align/BSNT_05677___rpoE.1.24716.seq
# -bsequence pep-align/BPUM_3361.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05677___rpoE-BPUM_3361.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05677___rpoE-BPUM_3361.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: BPUM_3361
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 184
# Identity: 102/184 (55.4%)
# Similarity: 138/184 (75.0%)
# Gaps: 21/184 (11.4%)
# Score: 510.5
#
#
#=======================================
BSNT_05677___ 1 MGIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEE 50
|.:|:||||:||.|:|||:|:|:|.:.|.|:.|.||::|:..|.|::|.:
BPUM_3361 1 MSLKEYSQEQLKHMSLVELAYEIFRDSKTPITFSELIDEMVRLQGIQKSD 50
BSNT_05677___ 51 LGDRIAQFYTDLNIDGRFLALSDQTWGLRSWYPYDQLDEETQPTV--KAK 98
|.||:|||||||||||||::|.||.||||||||.||::||.||.| |||
BPUM_3361 51 LDDRLAQFYTDLNIDGRFISLGDQRWGLRSWYPVDQIEEEVQPAVKTKAK 100
BSNT_05677___ 99 KKKAKKA-VEEDLD-LDEFEEI-----------DEDDLDLDEVEEELDLE 135
|||.|.| ||||.| ::|.||| |:||||||: :||::.|
BPUM_3361 101 KKKTKAAVVEEDFDEIEEEEEIEELEEDLDLVEDDDDLDLDD-DEEIEEE 149
BSNT_05677___ 136 ADDFDDEDLDEDDDDL-EIEEDIVDEDDEEEEIK 168
.:|||::| |||||.| ||:||.:|:::||:
BPUM_3361 150 IEDFDEDD-DEDDDGLTEIDEDDLDDNEEEK--- 179
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