Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05332 and BPUM_3140
See
DNA alignment /
Visit
BSNT_05332 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence pep-align/BSNT_05332___yvoA.1.24716.seq
# -bsequence pep-align/BPUM_3140.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05332___yvoA-BPUM_3140.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05332___yvoA-BPUM_3140.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05332___yvoA
# 2: BPUM_3140
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity: 144/243 (59.3%)
# Similarity: 177/243 (72.8%)
# Gaps: 2/243 ( 0.8%)
# Score: 723.0
#
#
#=======================================
BSNT_05332___ 1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMT 50
|.|:||||||:|:||||.||.|||:|.|.||..:||||||||:|||||||
BPUM_3140 1 MFIDKQSPIPMYHQIMENLKKQIKDGTLAPDTLIPSEREYAERFGISRMT 50
BSNT_05332___ 51 VRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTP 100
||||||||||||.|||.||:|||||:.|.||.|||||||||||:.||:|.
BPUM_3140 51 VRQALSNLVNEGYLYRQKGKGTFVSQKKFEQPLQGLTSFTEDMRQRGLTA 100
BSNT_05332___ 101 GSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIP 150
.|:|||::.....|.|..:|...:..:|.::.|:|||||.|||||:|:||
BPUM_3140 101 SSKLIDFKKTVCPEHLLPVLQLSNGDAIFELKRIRLANDEPMAIETSYIP 150
BSNT_05332___ 151 FELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGI 200
...||:|...|...|||::||....:.|:.||||||.:.|:.|||::|.|
BPUM_3140 151 EAFAGDLTREHLTGSIYEYIEAQTGLTIAHAKQELEANVASKEEAHVLSI 200
BSNT_05332___ 201 QKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRLS 243
..|.|||.|.||||.||...||:..||||||||..:|.|:|
BPUM_3140 201 STGDPVLSIARTTYFQNDVPFEYVLSVYRGDRYKLIHTMER-- 241
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.