Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04978 and BPUM_3002

See DNA alignment / Visit BSNT_04978 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence pep-align/BSNT_04978___yvgL.1.24716.seq
#    -bsequence pep-align/BPUM_3002.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04978___yvgL-BPUM_3002.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04978___yvgL-BPUM_3002.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04978___yvgL
# 2: BPUM_3002
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 265
# Identity:     151/265 (57.0%)
# Similarity:   200/265 (75.5%)
# Gaps:           6/265 ( 2.3%)
# Score: 779.0
# 
#
#=======================================

BSNT_04978___      1 ----MFKKYSIFIAALTAFLLAAGCSSNQSSTDSEKKVTLTISAAASAED     46
                         :..|| ||:|.::..||.:||.:....::::||..|.||||||.:|
BPUM_3002          1 MIRGVNMKY-IFLALISICLLLSGCQTEMKPSNTKKKTELVISAAASLQD     49

BSNT_04978___     47 ALEEIQKNYEKEHQNITIQDNYGSSGALQKQISQGAGADLFFSAAEDKFK     96
                     ||:||:.::.|:|.::|:.:|:||||||::||:|||.|||||||||:.|.
BPUM_3002         50 ALKEIEASFHKQHPHVTLTNNFGSSGALKQQIAQGAKADLFFSAAEEPFD     99

BSNT_04978___     97 KLVDDGDIAKKDSTDLVGNEIVLVVPKNGDSPVTSFSNLAESE-KIALGT    145
                     :||..|||.:....|.:.||:||:|||:|.|.:.||.::...: ||||||
BPUM_3002        100 ELVQSGDIDQDYIKDAIQNELVLIVPKDGSSSIKSFQDVQHIKGKIALGT    149

BSNT_04978___    146 PESVPAGAYGKESLTKLSLWDKVKDKIVYGKDVRQVLSYVETGNVDAGIV    195
                     |||||||.||||..|||::||:||...||.||||||||||||||||||:|
BPUM_3002        150 PESVPAGTYGKELFTKLNIWDQVKKNAVYAKDVRQVLSYVETGNVDAGVV    199

BSNT_04978___    196 YKTDALVSKKVNIIDEAKADTHSPIVYPLGIVKDTKHRKEAKEFYEYLQS    245
                     |||||||||||.|..||.:|.|||::||:||||.|||..|||.|:::|||
BPUM_3002        200 YKTDALVSKKVKIAAEANSDMHSPVIYPVGIVKGTKHLTEAKVFFQFLQS    249

BSNT_04978___    246 DEAMKVFEKYGFTAE    260
                     |:|..:|:||||...
BPUM_3002        250 DKAKSIFKKYGFQVS    264


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