Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04975 and BPUM_3000

See DNA alignment / Visit BSNT_04975 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence pep-align/BSNT_04975___yvsG.1.24716.seq
#    -bsequence pep-align/BPUM_3000.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04975___yvsG-BPUM_3000.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04975___yvsG-BPUM_3000.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04975___yvsG
# 2: BPUM_3000
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 173
# Identity:     107/173 (61.8%)
# Similarity:   133/173 (76.9%)
# Gaps:          20/173 (11.6%)
# Score: 558.0
# 
#
#=======================================

BSNT_04975___      1 MTGKTHIMGGIASCTAAAYYYGFDPVLMAASGAVGALIPDICHTQSKIGR     50
                     ||||||||||||:.||.|||||||||:|||:|:.||||||:|||:|||||
BPUM_3000          1 MTGKTHIMGGIAASTAVAYYYGFDPVIMAAAGSAGALIPDLCHTKSKIGR     50

BSNT_04975___     51 KFPILSKVVSSVFGHRTFTHSLLFMLIMFFITSTYIPDKNISAGLMIGMA    100
                     |||:||.::|||||||||||||||:||::|:.:||||:.::|.||::|||
BPUM_3000         51 KFPLLSALISSVFGHRTFTHSLLFLLIIYFLATTYIPNDSLSIGLLVGMA    100

BSNT_04975___    101 SHLILDAWTVNGIKLLFPSTIRVRLPLYMKTGSFSEQLVLAGLT-LASCY    149
                     |||||||.||||||.|||::|:||||.|:||||       .|.| ..||.
BPUM_3000        101 SHLILDAGTVNGIKFLFPASIKVRLPFYVKTGS-------TGRTSRTSCS    143

BSNT_04975___    150 YF-YMLFHGRMF-----------    160
                     :. ::|.|.|..           
BPUM_3000        144 HCRHLLLHRRHLRHIDPHSVLTE    166


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.