Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04436 and BPUM_2676

See DNA alignment / Visit BSNT_04436 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence pep-align/BSNT_04436___ytrB.1.24716.seq
#    -bsequence pep-align/BPUM_2676___ytrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04436___ytrB-BPUM_2676___ytrB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04436___ytrB-BPUM_2676___ytrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04436___ytrB
# 2: BPUM_2676___ytrB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     213/298 (71.5%)
# Similarity:   255/298 (85.6%)
# Gaps:           6/298 ( 2.0%)
# Score: 1138.0
# 
#
#=======================================

BSNT_04436___      1 ------MIELRQLSKAIDGNQVLKDVSLTIEKGEIFGLLGRNGSGKTTML     44
                           :||:|.:||.::|.:||.:||..:.:||||||||||||||||:|
BPUM_2676___y      1 MREEKKLIEVRNVSKTLNGREVLSNVSFKLGEGEIFGLLGRNGSGKTTLL     50

BSNT_04436___     45 RLIQQIIFADSGTILFDGVEIKKHPKVKQNIIYMPVQNPFYDKYTYKQLV     94
                     ||||||:..|.|.|.|..|.:|.||.|||||:||||.||::|:|.|.|||
BPUM_2676___y     51 RLIQQILLPDEGEIYFKDVLVKDHPLVKQNIVYMPVVNPYFDRYNYGQLV    100

BSNT_04436___     95 DILRRIYPKFDVTYANELMNRYEIPETKKYRELSTGLKKQLSLVLSFAAR    144
                     .:|:.|||||||||||||:|||||||..|||||||||||||||:||||.:
BPUM_2676___y    101 QLLKHIYPKFDVTYANELVNRYEIPEKVKYRELSTGLKKQLSLILSFAIK    150

BSNT_04436___    145 PALILLDEPTDGIDAVTRHDVLQLMVDEVAERDTSILITSHRLEDIERMC    194
                     ||:|||||||||||||||:||||||:||||||:|||||||||||||||||
BPUM_2676___y    151 PAVILLDEPTDGIDAVTRNDVLQLMIDEVAERETSILITSHRLEDIERMC    200

BSNT_04436___    195 NRIGFLEDNRLTNVMDLDELKEEYIKIQMAFDTDVNLAIREQNIPMLDQA    244
                     |||||||.|:||:||||||||.:|:||||||:.|:||:||:..:.:||||
BPUM_2676___y    201 NRIGFLEGNQLTSVMDLDELKNDYVKIQMAFEEDMNLSIRKNGVAILDQA    250

BSNT_04436___    245 GVFYTVLIPKSDEEKKSFLRELKPKVWNELPVNLEEVFIAKFGGKRRW    292
                     |:|||.|:.|:|.|.|.:|:.|:||||:||||||||||||||||||||
BPUM_2676___y    251 GIFYTALVLKTDVEAKEYLKSLQPKVWHELPVNLEEVFIAKFGGKRRW    298


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