Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_03427 and BPUM_2036

See DNA alignment / Visit BSNT_03427 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence pep-align/BSNT_03427___ypbB.1.24716.seq
#    -bsequence pep-align/BPUM_2036___ypbB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03427___ypbB-BPUM_2036___ypbB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03427___ypbB-BPUM_2036___ypbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03427___ypbB
# 2: BPUM_2036___ypbB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 352
# Identity:     172/352 (48.9%)
# Similarity:   236/352 (67.0%)
# Gaps:           2/352 ( 0.6%)
# Score: 871.5
# 
#
#=======================================

BSNT_03427___      1 MSLNYFDIMVLDCLCKINGERSGSAVFHLFKGKRSSQTIQDAGLFQTAKY     50
                     |:|:|.|:|::|.:.|:|||||.|||:||||||:||||||||.||:.::|
BPUM_2036___y      1 MTLHYLDVMLMDSVYKLNGERSISAVYHLFKGKKSSQTIQDASLFELSRY     50

BSNT_03427___     51 FGMAAQCSRSDVSESLDKLEKHSYLSPMSETDTYKVTASGAAVLRHALSE    100
                     ||.....:|..::.|..|||:..|:....|  |..:|.:|..:|....||
BPUM_2036___y     51 FGCYPGFTRDQLNRSALKLEEKHYIRKNDE--TLSITEAGQRMLHQHFSE     98

BSNT_03427___    101 RPWPVHCHGAHYQQAAGVLWKRLSLLVQVLSHKQQGSRQYIPVTKDHKTL    150
                     :|.|.:.|||.|...|.:||.|||||||||||...||.||:|:.:|....
BPUM_2036___y     99 KPMPTYFHGAKYHDKAKMLWMRLSLLVQVLSHHMAGSHQYVPIQRDVSVQ    148

BSNT_03427___    151 HWVKKYLSRHTDHIEMAKSLFAMLEAHLKKIENKAAQIFVYSLTSHHRIG    200
                     .|.|.:|.:|....:::|.|...||..|..:..:.|.||||||||:.|||
BPUM_2036___y    149 SWTKSFLKQHQQKSKLSKDLHHELEKLLMYLSEQEAVIFVYSLTSNERIG    198

BSNT_03427___    201 YTSRQLADTLKEDEWYVYIMFWASVHYFIHSLPECEDALLKDLLSDVHLD    250
                     .|.:|:|:.:|||.||||::||..:||||.|..:.|..:|:.|:.|:...
BPUM_2036___y    199 RTYQQMAEWMKEDVWYVYLLFWNVLHYFIQSAQKGEAPILQQLIGDLEFK    248

BSNT_03427___    251 NALTESTRKTWQMVKQGFPIHRIAEIRKLKTATIEDHIVEISLHEPAFMI    300
                     ..||.||:||.::|::||.|.:||.||.||.|||||||||:|:|||:|.|
BPUM_2036___y    249 RVLTTSTQKTLELVQKGFDIEQIAHIRSLKKATIEDHIVELSIHEPSFSI    298

BSNT_03427___    301 NDYVSAEDQLQIAEFAKRMRTNKIKQIRDGLEQRFSYFQIRLALTKQVQQ    350
                     ..|||.|:|..|...||.::|||:|.|::.||..|:|||||||||:.|:.
BPUM_2036___y    299 EPYVSIEEQQAILAVAKELQTNKMKLIKEKLEHPFTYFQIRLALTRMVKA    348

BSNT_03427___    351 YD    352
                     ..
BPUM_2036___y    349 NG    350


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.