Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03368 and BPUM_1996

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence pep-align/BSNT_03368___trpF.1.24716.seq
#    -bsequence pep-align/BPUM_1996___trpF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03368___trpF-BPUM_1996___trpF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03368___trpF-BPUM_1996___trpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03368___trpF
# 2: BPUM_1996___trpF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 220
# Identity:     104/220 (47.3%)
# Similarity:   147/220 (66.8%)
# Gaps:           6/220 ( 2.7%)
# Score: 538.5
# 
#
#=======================================

BSNT_03368___      1 MKKPALKYCGIRSLKDLQLAAESQADYLGFIFAESKRKVSPEDVKKWLNQ     50
                      .||.|||||..||:|::..|:||||.:|||||.|||:|.|..||:||::
BPUM_1996___t      1 -MKPFLKYCGAGSLEDVKCIAQSQADAIGFIFAPSKRQVDPNQVKQWLSK     49

BSNT_03368___     51 ARVEKQVAGVFDNESIETMSRIAKSLKLDVIQLHGDEKPADAAALRKLTG    100
                     ::..|::.|||.||:.:.:..|.|.:.||::||||||...||..:::.||
BPUM_1996___t     50 SQCRKKITGVFVNENTQKVCDITKHIPLDIVQLHGDETKEDAKQIKQQTG     99

BSNT_03368___    101 CEIWKALHHQDN---TTQEIARFKDNVDGFVIDSSVKGSRGGTGVAFSWE    147
                     ..:||..||..:   |..::..|...||||:||:.|||.|||:|.||:||
BPUM_1996___t    100 TVVWKVFHHDPDIKGTLDKMTAFAPFVDGFLIDAKVKGMRGGSGTAFTWE    149

BSNT_03368___    148 CVPEYQQAA--IGKRCFIAGGVNPDSITGLLKWQPEGIDLASGIEKNGQK    195
                     .||.|.|.|  :.|.|.||||:.|:::..||.:.|:.|||:||||::|:|
BPUM_1996___t    150 AVPLYNQHAKRLEKTCIIAGGITPETLPELLAYGPKAIDLSSGIEEDGKK    199

BSNT_03368___    196 DQNLMSLLEERMNRYVSISE    215
                     ....:..|||||...|.||:
BPUM_1996___t    200 SSAKIKALEERMLNNVRISK    219


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