Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03303 and BPUM_1952
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence pep-align/BSNT_03303.1.24716.seq
# -bsequence pep-align/BPUM_1952___ypsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03303-BPUM_1952___ypsA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03303-BPUM_1952___ypsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03303
# 2: BPUM_1952___ypsA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 223
# Identity: 126/223 (56.5%)
# Similarity: 156/223 (70.0%)
# Gaps: 26/223 (11.7%)
# Score: 658.5
#
#
#=======================================
BSNT_03303 1 -----MENVQLDGVNNAAQQMGPTGAPFFKAGEMMKVLAITGYKPFELGI 45
.:.|:.|...:. |.||||.||::|:||||||||||
BPUM_1952___y 1 MDLAVTDKVEWDFYKSL----------FLKAGEKMKIIAVTGYKPFELGI 40
BSNT_03303 46 FKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEVAYDLQ 95
||||:.||.|||..::.||.|.:::||||:|||||||.|:|.|||.::||
BPUM_1952___y 41 FKQDEPALQYIKAELQKRLTALIEDGLEWVLISGQLGAEIWTAEVVFELQ 90
BSNT_03303 96 EEYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRPYESP 145
||||.||:|||||||:||:.|.|.|||.||.:|||||:..|:||||||||
BPUM_1952___y 91 EEYPALKLAVITPFYDQEERWNEQNKELYEGILAQADFVESVTHRPYESP 140
BSNT_03303 146 LQFKQKNQFFIDKSDGLLLLYDLEKEGSPKYMLGSAEKRREQDGYPIYFI 195
.||||||:|||:|:||||.|||.|.:||||||:..||...: |||.:|
BPUM_1952___y 141 AQFKQKNRFFIEKTDGLLALYDPEHDGSPKYMIKEAENYTD---YPIMYI 187
BSNT_03303 196 TMDDLRVTVE-EDSYS------- 210
||||||..|| ||.:.
BPUM_1952___y 188 TMDDLRAQVEAEDPFFDEKQEKI 210
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