Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03284 and BPUM_1939
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence pep-align/BSNT_03284___ypbR.1.24716.seq
# -bsequence pep-align/BPUM_1939.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03284___ypbR-BPUM_1939.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03284___ypbR-BPUM_1939.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03284___ypbR
# 2: BPUM_1939
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity: 594/1210 (49.1%)
# Similarity: 807/1210 (66.7%)
# Gaps: 28/1210 ( 2.3%)
# Score: 2951.0
#
#
#=======================================
BSNT_03284___ 1 MTDQN-RKELLHKTGELYKQFIENQDEQRAAKLAAVMKKAADEEVYIAFT 49
|.|.: |..|:...|.||:.|::..|.:||||||:::||.|:||||||||
BPUM_1939 1 MKDLSIRDSLVQTAGALYQSFLKRNDHERAAKLASIIKKEAEEEVYIAFT 50
BSNT_03284___ 50 GHYSAGKSSLLNCLLMENILPTSPIPTSANLVVIRNGEKRVRLHTTDGAC 99
||||||||||:|.||.::||||||||||||||::|.||..|:|||:||..
BPUM_1939 51 GHYSAGKSSLVNHLLHDHILPTSPIPTSANLVIVRKGESEVQLHTSDGRF 100
BSNT_03284___ 100 AELEGAYQKDKVQQYCKDGEQIESVEIFDRYTEIDSGVAYIDTPGIDSTD 149
|::.|:|.|:.||::||||||||.|||...|..::..||.||||||||||
BPUM_1939 101 AKMSGSYDKEAVQRFCKDGEQIEMVEISGDYRGLEENVALIDTPGIDSTD 150
BSNT_03284___ 150 DAHFLSAASILHQADALFYVVHYNHVHSEENVKFLRSIKESIPNVYFIVN 199
.||||||||||||||||||||||||||||||::|:|||||.:||:|||||
BPUM_1939 151 HAHFLSAASILHQADALFYVVHYNHVHSEENIRFIRSIKEKVPNLYFIVN 200
BSNT_03284___ 200 QIDRHDETETKFGDYKAQVEEMLCNEGISKEALYFTSVTEPDHPFNQMGA 249
|:|||||.||.|.|||.||.:||..|||.::.|||||||:..||.|:|..
BPUM_1939 201 QVDRHDEHETAFEDYKNQVIDMLLKEGIEEDHLYFTSVTDETHPRNEMIC 250
BSNT_03284___ 250 LREELRRIEQQSKSNMQALTEQKVRNLLKEHTEMLKKDETGAPSFAEQLN 299
|.::|:.::...|::::|.||||:.::||||.:.||:|..| .....||.
BPUM_1939 251 LIKKLQELQTLPKASLRAYTEQKIEHVLKEHIDSLKEDLQG-EELESQLE 299
BSNT_03284___ 300 IQTGLVQSLRDQFNEAEKQTTEAEKRMQEEINLILKNANLTPFEMRELAA 349
.:...|:.|..:.:..|....:.|:.:..||..||||||||||:|||||:
BPUM_1939 300 EKRKEVKELEAKIHFIENGAKQLEEEVSNEIESILKNANLTPFKMRELAS 349
BSNT_03284___ 350 AFLESQEPSFKTGFFFSKAKTAQERDKRRNAFFSDVAKRTEAEADWHMID 399
.::||:.|.||.|..|:|.||.||::||...|.:||..|.:||.|||:.:
BPUM_1939 350 DYIESKAPGFKVGLLFAKNKTEQEKEKRATDFLTDVKARMKAEVDWHIAE 399
BSNT_03284___ 400 TLHKLAKAFDVYTAESEKL---IQAYRTPLDISIIERAVKHGAAFSSEYV 446
.|.|..|...: .|.| :.|:.||:..|::|..:.|||.||:|||
BPUM_1939 400 LLKKEVKKHQL----GEDLLNQVMAFETPVQESLLESVIHHGATFSNEYV 445
BSNT_03284___ 447 LQYTKDLAELIRKEAKREAADIIKVLSAMVKERVSKDVQTINDRLVQESE 496
|||.||..|.:|::||::|..:|:.:...:|.::.:|.....::..|.::
BPUM_1939 446 LQYAKDAGEALRRQAKQQAMPLIEQMVESLKAKLMEDRVEQQEKWAQSAK 495
BSNT_03284___ 497 KLVFLQEQARLENNAREKTDRLWAIWEEESACPMHIDTEWFKSKKTRVAA 546
:|..|::..:.....:.....||.|| ::.....|:.:||.:||.::..
BPUM_1939 496 ELQTLEQCTKKNEQMKRDIQHLWDIW--QNGTDEKIEEDWFYAKKRQMQH 543
BSNT_03284___ 547 PEQKQGRSQLTA----QPMPKSEI-----KMEQEMPLQDQIKRFYTLSDL 587
.:.||..:.:.. |..|..:| :..|.:.....|.:|..||.:
BPUM_1939 544 DQLKQDLATIPPEERDQEKPNKQIEQPKMRQSQHVTTAQSIAQFEQLSQI 593
BSNT_03284___ 588 LGECSMLLKQTSAFRERVKRLEERKFTLALFGGFSSGKSSFANALVGERV 637
|.....|..|..:|.:|.|||:.::|||||||.||||||||||||||.:|
BPUM_1939 594 LLPLDALQSQRKSFEKRTKRLQAKEFTLALFGAFSSGKSSFANALVGRKV 643
BSNT_03284___ 638 LPSSPTPTTATINKITMPINGNLNKTADVVFKTEDDITAEILQLTGIP-K 686
||||||||||||||:|.|...:.:::..||||||.||..|:.|:.|.| .
BPUM_1939 644 LPSSPTPTTATINKLTRPTEDHPHESVKVVFKTEQDILEELNQILGFPVS 693
BSNT_03284___ 687 EPAGRSFTEKWEKAVKKNRLQEEHVKLISNFLLAYEKYQQYIQEQKKLTI 736
:..|.:...|.|:.:||.:|:::|..::.:||.|:.::..:|.:|..|.:
BPUM_1939 694 DEKGETLPSKLERTLKKRQLEQDHRIIVEHFLHAHTRFLDHITKQTPLHV 743
BSNT_03284___ 737 PLSELKPYVAEETTACVVKEVTVYYTCPLTEKGITIVDTPGASSMNKRHT 786
.|.||:||||||..:|||||||||.:.|||:||:||||||||||||||||
BPUM_1939 744 TLQELRPYVAEEAVSCVVKEVTVYLSTPLTDKGLTIVDTPGASSMNKRHT 793
BSNT_03284___ 787 ELAFQYIKDADAFFYMTYYQHSFSKGDRSFLRKLGLVKESLSMDKMFFII 836
|:||||:|||||..|:|||||||||.||||||||||||:|.|||||||||
BPUM_1939 794 EIAFQYMKDADALLYLTYYQHSFSKADRSFLRKLGLVKDSFSMDKMFFII 843
BSNT_03284___ 837 NAADLAKDKTELETVTDYVSAELVKEGVYEPQLFTVSSKEELVGKPESFY 886
||||||||:.||:||.|||..||.|||:..|.|..||||||:.||.|:.|
BPUM_1939 844 NAADLAKDQAELDTVFDYVKNELTKEGIRNPNLHHVSSKEEIDGKGETAY 893
BSNT_03284___ 887 NQFSKVRKHLDRFIEVDVKKASAAQLSSEADKLCETVFQLHQSQHQSREE 936
||::|:||.||.|||.::.|.:...|..||..||.||.:||.|.|||.:|
BPUM_1939 894 NQYAKLRKQLDYFIEEELTKDAIELLYFEAGTLCRTVDKLHASLHQSEDE 943
BSNT_03284___ 937 KEAQKQRLMLSFERTAADIEKRRNSKTIIEKVKKDTREQLYHIAQRLSYF 986
|:|:|:::..|:|.....:...:.||.:.|.||||..||||||.||||.|
BPUM_1939 944 KQAEKKKIDASYEAILDQMSHVKQSKLVTESVKKDLLEQLYHIVQRLSLF 993
BSNT_03284___ 987 ANDLLKSAFHPGLQNGDWKKNVSKAMTTALHEYQFEYIQEIKTLDVRMSG 1036
||||||:||:||:..|::.:.:.||:..||.:|:||::||:|.||:||..
BPUM_1939 994 ANDLLKTAFYPGISQGNFGQQLKKALEKALKDYEFEFVQELKALDIRMES 1043
BSNT_03284___ 1037 FIERHINEEWLDQFQKTLNEDGYFSVYAGDQHSNGIQLKEVEPEIEERAF 1086
||.::..|||....|....:|.|||:..........:||::|.:.|...|
BPUM_1939 1044 FILQYFQEEWEKGLQAACADDPYFSLSLSPPEEKNAELKQIEVKAELTPF 1093
BSNT_03284___ 1087 EQELKEVKSPKQFFEQKGKAAFIEAVRMKLTKITEAWIKNEEESLISHYT 1136
|..||:.||.|.||||.|||||||.:|..|.::|..|...|:|.|:|.|.
BPUM_1939 1094 EPILKKQKSAKVFFEQNGKAAFIEGIRDILHQVTTKWADKEKEELLSRYD 1143
BSNT_03284___ 1137 AHLRRLQEDMGEKAIAQITDQKETYLRGYAEGEHAKE---IEMAYQACIS 1183
..::...|....:|:.|:.:||:|::.... ..||| ||..|:....
BPUM_1939 1144 MMVKTFTERYETEALDQLNEQKQTFITSLT--TDAKEQAVIEQVYEQTNE 1191
BSNT_03284___ 1184 WKNSDNTIKM 1193
|||...:|
BPUM_1939 1192 WKNQLKSI-- 1199
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