Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03242 and BPUM_1907

See DNA alignment / Visit BSNT_03242 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence pep-align/BSNT_03242___ypmR.1.24716.seq
#    -bsequence pep-align/BPUM_1907___ypmR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03242___ypmR-BPUM_1907___ypmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03242___ypmR-BPUM_1907___ypmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: BPUM_1907___ypmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     139/256 (54.3%)
# Similarity:   195/256 (76.2%)
# Gaps:           4/256 ( 1.6%)
# Score: 740.5
# 
#
#=======================================

BSNT_03242___      1 MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETK-TKEHIVIAAVGDS     49
                     ||.|:..|:.||..:|:||::.....  |.|..:|: .||||.|||||||
BPUM_1907___y      1 MKARLILIVMSLAFVLSACSAQEAGI--KDKLEDTQDVKEHITIAAVGDS     48

BSNT_03242___     50 LTEGVGDPDGKGYVGKVADSIRSDKQVKTVDVKNYAVKGNRSDDLLEKLK     99
                     ||||:||...|||.|...|.:.:...|::|.:||||:||:|:.|||::||
BPUM_1907___y     49 LTEGIGDQQKKGYAGMTRDKLEAVDGVQSVTLKNYAIKGSRTVDLLKRLK     98

BSNT_03242___    100 DKKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRF    149
                     :||||.|:|||||:||||||||||.::|||.|.||..|||:.:.|:|:||
BPUM_1907___y     99 EKKVQDGLKDADYIFFTIGGNDLMHVVRQNVLNLTFAPFQKEQGPFEERF    148

BSNT_03242___    150 EKIISEIRELNDHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKEL    199
                     :.|::::||.||||:::||||||||.|:|:||.:|:.||.|||.:|:|||
BPUM_1907___y    149 KTILAQLREHNDHAKIMYVSMYNPFKFSLTELKDIDEVVKDWNAVAKKEL    198

BSNT_03242___    200 KKDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIAKRVYQAIKK    249
                     |||.:|:::::.|||.:.|| .::..:||||||..||||:|.|::..:||
BPUM_1907___y    199 KKDGNAEMINVADLFEEDSD-EKLLADDDFHPNQKGYSLMANRLFSKVKK    247

BSNT_03242___    250 EGLPKE    255
                     ||||||
BPUM_1907___y    248 EGLPKE    253


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