Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03196 and BPUM_1881

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence pep-align/BSNT_03196___yodH.1.24716.seq
#    -bsequence pep-align/BPUM_1881.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03196___yodH-BPUM_1881.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03196___yodH-BPUM_1881.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: BPUM_1881
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 233
# Identity:     110/233 (47.2%)
# Similarity:   149/233 (63.9%)
# Gaps:           1/233 ( 0.4%)
# Score: 549.0
# 
#
#=======================================

BSNT_03196___      1 MSRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPNQPILDAGCGTGQTA     50
                     ||.|:|||:.|||:.|||||:..:|.:|:....:|...||||||||||||
BPUM_1881          1 MSDYVEMLAYFGVSSAHPGGIELTKTMLEHIKLTPEARILDAGCGTGQTA     50

BSNT_03196___     51 AYLGHLLYPVTVVDKDPIMLEKAKKRFANEGLAIPAYQAELEHLPFSSES    100
                     ||||::.|.|..:|..|:|:|||..||..|.|.|.|.||.:|.|||..|.
BPUM_1881         51 AYLGNIGYQVEAIDTHPLMIEKANLRFEREELPIRALQASIEQLPFPDEV    100

BSNT_03196___    101 FSCVLSESVLSFSRLTSSLQEISRVLKPGGMLIGIEAALKKPMPPAEKKQ    150
                     |:.::|||||||:.|.::|.||.|||.||..:|..||.||.|:.|.|...
BPUM_1881        101 FNLLISESVLSFTNLPAALAEIKRVLAPGSQMIANEAVLKAPLTPKELAT    150

BSNT_03196___    151 MMDFYGFTCLHEESEWHKLLRSYGFQKTEAMTLLPEDMEFEPTTEMDLSQ    200
                     :.|||||..|....:|.:.|::.|||....:: ..|.|..|..|||:||:
BPUM_1881        151 VRDFYGFHALFSVEDWQEQLKAAGFQDVRILS-FDEHMVQEEPTEMELSE    199

BSNT_03196___    201 TIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK    233
                     .|.|..|:|:||||.|:|.:.:::.|.:|....
BPUM_1881        200 YIPPSLYETMQTHYDLIQAHRKHLSHILFECTV    232


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