Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03135 and BPUM_1853

See DNA alignment / Visit BSNT_03135 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence pep-align/BSNT_03135.1.24716.seq
#    -bsequence pep-align/BPUM_1853___yocK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03135-BPUM_1853___yocK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03135-BPUM_1853___yocK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03135
# 2: BPUM_1853___yocK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 168
# Identity:      66/168 (39.3%)
# Similarity:   100/168 (59.5%)
# Gaps:          38/168 (22.6%)
# Score: 371.5
# 
#
#=======================================

BSNT_03135         1 MALTKEQTQHLYHKLLDMQKELSGEKKETESMTEEVGELSNGVDNHMADH     50
                                                    |..|..|:||||.||:|||
BPUM_1853___y      1 -------------------------------MLSESSEISNGVGNHIADH     19

BSNT_03135        51 GTLVTDRMTDQTVREIDRELLEEVNRALQKMKDGTYGVCEKTGQEIPYER    100
                     |::..||||:||:.::|.:|..|::.||::|:|||||:|||||:||||||
BPUM_1853___y     20 GSIYLDRMTEQTLDQVDDQLEAEIDAALKRMEDGTYGICEKTGKEIPYER     69

BSNT_03135       101 LEAVPYARMTVEAQADVEDDLETDAPSYEREFHEQVKDLSNKETIDQKSS    150
                     |:||||.|.:::|:.:  ::...|...::|.|.:|::||:|::|:||..|
BPUM_1853___y     70 LKAVPYTRYSIDAKKN--EETTQDPNEFDRNFSDQMRDLTNRQTMDQMHS    117

BSNT_03135       151 QTYEILDREQDSK-----    163
                     .|||.|:.|||..     
BPUM_1853___y    118 DTYERLEEEQDVDIDDDK    135


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.